Pnig031289.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438964.1:5147492-5166176[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.3 7.5e+02 1.9 0.6 1 20 242 261 242 264 0.66 2 10 0.14 13 7.4 0.2 2 20 460 478 459 481 0.92 3 10 0.0019 0.17 13.3 0.0 2 21 487 506 487 507 0.94 4 10 6.1 5.5e+02 2.3 4.5 5 23 616 634 614 634 0.91 5 10 0.0043 0.39 12.2 0.8 2 23 650 671 649 671 0.93 6 10 1e-05 0.00095 20.4 2.5 1 23 677 699 677 699 0.98 7 10 0.00024 0.022 16.2 1.0 1 23 703 725 703 725 0.98 8 10 0.014 1.3 10.6 0.2 2 23 732 754 731 754 0.96 9 10 0.015 1.3 10.5 1.4 1 20 759 778 759 782 0.94 10 10 0.012 1 10.9 0.2 3 23 791 812 790 812 0.95
Sequence Information
- Coding Sequence
- ATGTCTGGAACGATTCAAAAGAGGAGTAGAAAGTCTAAATTGGTGCCGCGATCGTTCAAAGACAGCGAAGATTCCGATATTTTGCAGGATGAAccgaagaaaaaacaaaaattatcaaATGCATCTAGCAACATGGATTTTATACAAGACCAACCTTCGACATCTGCATATCAACCTTTACAGTTTGACATCAAAGTTGAAGTAGAAGAGTGCGATGAGTTTGAAATGGCAAACATAAAATCTGAAATTAtcaatgaaaatgatttattagaAGTAGAAGAACAGGATATCAACATGTTACTTGCCCAAGCTATGAGTACGAAGCAAGGTCCACTGCTGGACTTCAGCGACAATGAAAGTGAggataataatactaataattttaCAGTTGAACTTGATCATGATTACGGTCCAAAAGATCAAGAAAATACACAATGTATTACACTTCAAAATAACAATTTGAAAAAGACCAGTAAGAAACTCCAAAAACCAACGTCGCACTACCAAATAGAGTTAGGGGAAGAGGACATTTTAAATGCATTAGATGAACTATCTAAACAGACAAAATTGACATTGGCTGACAATATATTGGGTGTAGAGGCGAGGAACTTGTTGGGATGCTGCAGAATGACTGTGCACAAACCCACTATGGTAGAGAATCAAGTCCAAATAGTGTTAAACAGTTTGAAGATCTCGAGCAAAGATGGAGAAGTACCATTGATGTATAAATGCTATATTTGCGAAAAGGCGTGGTGGCACCTTGGACCATTTCAAGACCATTTGTCTACACATGACGATGAATTAAGAGTGGAAGCTGAATCGCATATGCAAAGTATACATTACAATATTGTTGCATATTCGACTTTAGATAGTCCAGTACCACCCCAAGAGAGGGTAGAGACAGACTCCAAAGCCGAGGACGATGATTTGGAGAATGACATCCCGGCAACAACCATACTTATTAAGCAAGAACAGGAGGAGTTCGATGAAATGTTTGACAAagagaaaataattgaaagaaTGAAAAACAACAACTTCAGTGAAGACGATGAAGGATATGAAAATATTCTGTCCAGTGTTTTCAACGCTTCAACCGGAATGTTACTAGAAAACCAAATAGCAGAAGAAACGGGTGATTTTGACGAACTCATAAAAACagaattgaaaaatattaaatctgagccgtcaaaaaaatcaaaatcaaacgAGATGACTGTTATATTTGATAATTCTGAAATTGGTGGAGACATAAATTTGGAAGTAGTATCCAGCATAGAAAAACCTAAAACATTGagatgttattataaaaaatgcaAGTATAAGACGCTAGATAAAACAGATTTAAAATTGCACCGATTGAACCACAACGGTGTGATCACTTGTAGCAAATGCGACGAGCCTTTCATCAGTTTGAGGAAGTATCTGAGCCATTTACCAGATCATGGATTCGTGAAGAATTCCTGCCCGGAGTGCTTAAAAACATATACGAGTTTTGCAGGCTTGAACGCACATATCCGGATTGTAGTTGACCGACAGTTCTCAAAAACACAGTTCATTGACAAGGAGTTTGGCAAAATTGTTGTCAGGTATCAATGTAAGAGGTGCAAAGAGTTAGTGCCAGGTGGGTCGCTCACTAATCACTGGGAAAAGCACCTTAGCACAGTTGATATGATTGCAGTAAAAGTGGAAATAACACTCGGGGAGGGTGAAGTGGATGTCGATGGGATACAATACAACGAATCAGATGATTCACCGGAAAACTTGAGTCCAGAAGTCATTGCGCAAATTATTGcttcCCTCGTTgtcaaaaacaaatacaaaattaccCAGGATAAAGGCTGCATTGTTTGCGGTCGCAAGTTTCGAAGACATAACGATTCGAAACGACACCACATCGAGCATCTGCTTACCAACGCTTACTCCACGAAAGTAATACACCGTGGTCTTCGCTGCCAAATATGTGGAATGACATTTGACCTTGCTAGCATTTACAAACACCATATGAGAGGCCATTCTCACTTACGAGAATACAAGTGCAGTTTGTGCTTCAAAACATTCAGCGATGCAAGTAACTATGTCAAGCACAAAAAGATACACAGCTCTACGTATATTTGCGATCTGTGCAACAGGAAGTTTGAAAAGAAAAATTCTATTATCAAGCATATGGAGACTCACACAGCAGTTGATCCGATGCCATGTCAATTCTGCCCCAAAAAATTGTACTCGGAGACAGAATTAGCTCAGCATGTACGGAAGGCCCACAATCAGAATTTTTTCAAATGCCTCATTTGCAAGAAGAAGTTTAAATCGCTGAAAGACAAGTGGGACCACATGTGGCTACAGCACAAAGAGAGACAAATCAAAGCAGACTGTCCGGTTTGCAATGCTGAATTCAGGAAAGTGTCTGATATGAAATCTCATCTAAAGGATGAACACCAACAGTGCATAACGGTTATAAACTCAAAAATGTTTAAACAGTTACAAGATAAAGTTCAAgcgaaaataaaaattggtGCGGATCCAAGTCTATATATAAAACGTGAGTTGAGTCCGTTTGTCGTTATGAGAAGCGATTATAGAAAAGATTACGAAATTTACAGCAAGGATGATTTTTATGGTGCTCTTAGGAATGGAATTGAATAA
- Protein Sequence
- MSGTIQKRSRKSKLVPRSFKDSEDSDILQDEPKKKQKLSNASSNMDFIQDQPSTSAYQPLQFDIKVEVEECDEFEMANIKSEIINENDLLEVEEQDINMLLAQAMSTKQGPLLDFSDNESEDNNTNNFTVELDHDYGPKDQENTQCITLQNNNLKKTSKKLQKPTSHYQIELGEEDILNALDELSKQTKLTLADNILGVEARNLLGCCRMTVHKPTMVENQVQIVLNSLKISSKDGEVPLMYKCYICEKAWWHLGPFQDHLSTHDDELRVEAESHMQSIHYNIVAYSTLDSPVPPQERVETDSKAEDDDLENDIPATTILIKQEQEEFDEMFDKEKIIERMKNNNFSEDDEGYENILSSVFNASTGMLLENQIAEETGDFDELIKTELKNIKSEPSKKSKSNEMTVIFDNSEIGGDINLEVVSSIEKPKTLRCYYKKCKYKTLDKTDLKLHRLNHNGVITCSKCDEPFISLRKYLSHLPDHGFVKNSCPECLKTYTSFAGLNAHIRIVVDRQFSKTQFIDKEFGKIVVRYQCKRCKELVPGGSLTNHWEKHLSTVDMIAVKVEITLGEGEVDVDGIQYNESDDSPENLSPEVIAQIIASLVVKNKYKITQDKGCIVCGRKFRRHNDSKRHHIEHLLTNAYSTKVIHRGLRCQICGMTFDLASIYKHHMRGHSHLREYKCSLCFKTFSDASNYVKHKKIHSSTYICDLCNRKFEKKNSIIKHMETHTAVDPMPCQFCPKKLYSETELAQHVRKAHNQNFFKCLICKKKFKSLKDKWDHMWLQHKERQIKADCPVCNAEFRKVSDMKSHLKDEHQQCITVINSKMFKQLQDKVQAKIKIGADPSLYIKRELSPFVVMRSDYRKDYEIYSKDDFYGALRNGIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -