Pnig030232.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438963.1:3438282-3445542[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.07 6.3 8.4 3.8 1 23 381 403 381 403 0.93 2 14 0.0021 0.19 13.2 0.1 2 23 428 449 427 449 0.96 3 14 0.00065 0.058 14.8 2.5 1 23 471 493 471 493 0.97 4 14 0.026 2.3 9.8 3.2 1 23 497 519 497 519 0.97 5 14 0.0011 0.096 14.1 2.0 1 23 524 547 524 547 0.97 6 14 2.4 2.1e+02 3.6 0.6 1 15 554 568 554 572 0.81 7 14 0.0056 0.5 11.9 2.8 1 23 657 679 657 679 0.95 8 14 0.053 4.8 8.8 0.1 2 23 704 725 703 725 0.96 9 14 0.047 4.2 8.9 2.0 1 23 747 769 747 769 0.95 10 14 1.3e-05 0.0012 20.1 1.0 1 23 773 795 773 795 0.98 11 14 2.1 1.9e+02 3.7 1.0 1 13 800 812 800 823 0.71 12 14 8.8 7.9e+02 1.8 0.3 2 15 831 844 830 848 0.77 13 14 0.0039 0.35 12.4 2.1 2 23 861 883 860 883 0.94 14 14 0.016 1.4 10.4 4.7 1 23 889 911 889 911 0.96
Sequence Information
- Coding Sequence
- ATGACTTTCAGAATACCGTTGGAGCTGTCACGCACCCTGAATAACAGGGATGCTTGTTTTTTTCTGATGATGGCCGCGAAGCTATCTGTATGCGCCTCTGCGAACATGGCGGACGCACTACAAAAACGAGGCAGCCCCAGCAATATCCTGAAAGCATTGTTAAATTGGACTCGCATTTATCCATGTTTAGttctaaaacaaagaaaatgGAACTACACGGAGCAGGCTCTCAGGCAGGGCATAGAGGCGGCGCTCTCGAGCAACCAGCCGCTGTCGGTGGTGGCCGCGCAGTTCGGGGTCCCGCGGAAGACGCTCACCGAGCGCGTCTACAACCTCAGACAGAAGCTCAAGCCTGCTGTAGTAGTGTATAGTGGTTCAAGCGAAGAGGCTCGTAAGGCCACTGCACACTACACGGAGCAGGCTCTCAGGCAAGGCATAGAGCGGAAGTTCGGGGTCCCGCGGAAGACGCTCACCGAGCGCGTCTACAAACTCAGGCAGAAGCTCAAGCCTGATCTGACTGAGCCACTAGTGGTCGCGACTAGTGATCTGACTGAGCCACTAGTGGTCGCGACTAGTGATCTGACTGAGCCACTAGTGGACGCGACTAGTGATCTGACTGAGCCACTAGTGGTCGCGACTAGTGATCTGACTGAGCCACTAGTGGACGCGACTAGTGATCTGACTGAGCCACTAGTGGACGCGACTAGTGATCTGACTGAGCCACTAGTGGTCGCGACTAGTGATCTGACTGAGCCACTAGTGGTCGCGACTAGTGATCTGACTGAGCCACTAGTGGACGCGACTAGTGATCTGACTGAGCCACTAGTGGTCGCGACTAGTGATCTGACTGAGCCACTAGTGGACGCGACTAGTGATCTGACTGAGCCACTAGTGGTCGCGACTAGTGATCTGACTGAGCCACTAGTGGACGCGACTAGTGATCTGACTGAGCCACTAGTGGACGCGACTAGTGATCTGACTGAGCCACTAGTGGACGCGACTAGTGACaATGATGCTGGAGTGGGGAAACCGAGCAAGAAAAAAGCCCGAATCCCGACAGACTCCAGCAAATACAGAGACAATGTCATGGCTATCCTGACCTGGTCCACCGGCACCCCATTTAAAATCCACGGCAGTGAATACGTTTGCTGCTACTGCAATGAAGAGTTCTCCTCTGCCAAAGAACTCAAATGCCACACTCTAGCTCACGCAGACAAATGTAGCCACCAGAAAATACACTACTTCTGCCAGTTCAGCATCCGAATCGATATAACTGACCTCGAATGTCTCATTTGCGACAAAATCATTGACTCCTTAGAACATCTAACGGCACATCTCAAGATCCACGGAGTGGTGTATCACACGGATATAAAAAACCAGATCATCCCTTACAAATTCGATTCGGAGCAATTCAAATGCACTTTATGCGGTCAATTTTTTAGTTTCTTCAAATTGCTTAGCAATCACATGAGTGAGCATTACAGCAATTTCGAGTGTGACGAGTGCTGTAAAGCGTTTGTGAATAAAAACTTTCTGGCGAAGCACAAAAGCCGACATGAAGTTGGAGAGTTCGTTTGCAGAATCTGCAATAAAAAGTTCAGGTCTTCGACGAGACGCAACGACCATCAGAGGGTCGTCCATATATATTCGAACCAAGCGCACAAGTGTTGGAAGTGCGATATGTTCTTCCAAGATGCCGATAAGAAGGCGGAACACGATGTGGAGTCCCACGGAGCTGAACCCCCCACTTGGACCTATGATCCGGGAGAGTCTTCGGACGAGGAATCGATCGCGAGCCGGAAACGTCAGTACCTAGACGTAGTAGACGATCCGGAAGAGTCTTCGAATGAGGAAGCGATTGCGAACCGGAAACGAGAGAAACTATACGCAGTCGACAAATACAGAGACAATGTCAGGGCGATCCTGACGTGGTCGAACGCCACGCCCTTCACTACCCACGGATCGGATTTCGCTTGCTGCTACTGCGGAGTGGAGTTCTCATTCGCTACCGAACTCAAGCACCACACGCTTGACCACACGAACAAGTGCAACGATGACAAAATCAATGCCCTCTGCAAATTCAGCATCCGACTCGATATTACTAAATTGGAATGCCTCATTTGCTTCAAAAGCATTGATTCCTTAGAACAACTCGTGAATCACCTCAAAGCCCACGGACTGGTTTACCACACGGATATCATAAACGAAATCATCCCTTACAAGTTCGATAGCGACGGATTCCAATGTATCGTATGCAACCAAGCTTTTAACTTCCTCAAACTGCTCTGCAATCACATGAGCGAACATTACAGGAACTTCGAGTGTGATGAGTGCGAAAAAGCGTTCATAAACAGACGTTCGTTGGCGAAGCACAAAAAACGACACAACGTCGGAGAGTTCTATTGCGGTGTCTGTAACAAAAAGTTCCTGTCGAAAATCCGACGCGACCAGCACAAAAGAGTCGTTCACGTTTATTCGAACAAAGCAATCAAGTGCTGGAAATGTGACATGTTTTTTCAGGACATAGATCAGAAAAATTACCATGACATTGAGTGCCATGGCGCCCAGCCTCCAAATTGGACGTGTAGCATTTGCCACAAAATTGTAAAGAGCCGGAGGTCTTTGAGATATCACATTAGTTATTACCACGAGACGAGGAAACCCCATCAGTGTGCGCAATGTGGCAGAATGTTCTGTGATAAAAGGCGGCTGGATAGGCATTCCGCGAAACACTGTGGTAGCTAA
- Protein Sequence
- MTFRIPLELSRTLNNRDACFFLMMAAKLSVCASANMADALQKRGSPSNILKALLNWTRIYPCLVLKQRKWNYTEQALRQGIEAALSSNQPLSVVAAQFGVPRKTLTERVYNLRQKLKPAVVVYSGSSEEARKATAHYTEQALRQGIERKFGVPRKTLTERVYKLRQKLKPDLTEPLVVATSDLTEPLVVATSDLTEPLVDATSDLTEPLVVATSDLTEPLVDATSDLTEPLVDATSDLTEPLVVATSDLTEPLVVATSDLTEPLVDATSDLTEPLVVATSDLTEPLVDATSDLTEPLVVATSDLTEPLVDATSDLTEPLVDATSDLTEPLVDATSDNDAGVGKPSKKKARIPTDSSKYRDNVMAILTWSTGTPFKIHGSEYVCCYCNEEFSSAKELKCHTLAHADKCSHQKIHYFCQFSIRIDITDLECLICDKIIDSLEHLTAHLKIHGVVYHTDIKNQIIPYKFDSEQFKCTLCGQFFSFFKLLSNHMSEHYSNFECDECCKAFVNKNFLAKHKSRHEVGEFVCRICNKKFRSSTRRNDHQRVVHIYSNQAHKCWKCDMFFQDADKKAEHDVESHGAEPPTWTYDPGESSDEESIASRKRQYLDVVDDPEESSNEEAIANRKREKLYAVDKYRDNVRAILTWSNATPFTTHGSDFACCYCGVEFSFATELKHHTLDHTNKCNDDKINALCKFSIRLDITKLECLICFKSIDSLEQLVNHLKAHGLVYHTDIINEIIPYKFDSDGFQCIVCNQAFNFLKLLCNHMSEHYRNFECDECEKAFINRRSLAKHKKRHNVGEFYCGVCNKKFLSKIRRDQHKRVVHVYSNKAIKCWKCDMFFQDIDQKNYHDIECHGAQPPNWTCSICHKIVKSRRSLRYHISYYHETRKPHQCAQCGRMFCDKRRLDRHSAKHCGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -