Pnig030227.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438963.1:3400036-3407364[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0019 0.17 13.3 0.5 1 23 252 274 252 274 0.98 2 10 1.3 1.2e+02 4.4 0.4 3 23 298 319 296 319 0.93 3 10 0.051 4.6 8.8 1.8 3 23 342 362 340 362 0.91 4 10 4.8 4.3e+02 2.6 3.8 2 21 367 386 366 388 0.93 5 10 0.00013 0.012 16.9 1.7 1 23 395 418 395 418 0.94 6 10 0.00029 0.026 15.9 0.6 1 23 424 447 424 447 0.95 7 10 0.00021 0.019 16.3 3.2 1 23 453 476 453 476 0.97 8 10 1e-05 0.00092 20.5 1.4 1 23 482 504 482 504 0.98 9 10 4.9e-07 4.4e-05 24.6 0.7 1 23 510 532 510 532 0.98 10 10 5.3e-06 0.00048 21.4 1.3 1 23 538 561 538 561 0.98
Sequence Information
- Coding Sequence
- ATGAGTGTAAATAATCAAAAGGGGCCTGTGTTTGACCCGGGCTTGTGTCGCTGTTGCGGTGCCCTCAAGAAATGCCGCGTGCTGAATGTGGAATATGACTGGCGAGGCCAAAAAGAGGTGTATTGTGATATGTTTGTGGATTGTTTTGGTTTGATGCTATCAAATCTGGATGGAGAACCGCTAGAGCGTCTGATTTGTGCCACCTGCGTGTCCAGGCTGCGAGAAGCTAGTGCGTTCCGGCTCCAGGTGCTGCAGTGTGAGCAGACGCTGCTTCAAGCGAAAATTCACTTGCATGGCGATGAAGCAGCAGTCTCCAGCATCAAGAAAGAAGAGCCACAAATTAAAGTGGAGGTGCAGGTCACTGCGGAGCCTGCACAAGACAATGATGCATTTCCTAATGATGAGCCCCATCATGCCGACAGTGGATCGGATCATGCAGCTAACGATTCACAGGACGACAACACACCTCTCTCCACGATGAAATCGCCGAAGAAATCACCCAAGTTGAAGAAGATGAAAACTAAGAAAAAGTTGAAAGCGGAGAAGAAAAAGAACTGCCTCAGCCAAGAGAAGGACAGGAGACAGATGCTGGCCAGCATCGCCGAGATCAGCGAGCAGCTGAAGAGGATGCATGAAGATGAGATCCAACTCAAGCCGCCCAAGGTGATGGACAACGACCACAAAGGCTTCGTGAACGCTGTCGCCATAGTACAAAACTCATACGTCTGTCCGTTCGACAACTCCTTCAGCGACTATTACTGCGTGTACTGCAGAGGCATGTACACCGACCCGGACAAACTCAGAGAGCACACGCTAACCCACGACCCGACCGCTTTCAACGAATACGCACTCACCAAGAAACGACTCATGGTCGATATCCAAAGAATCGATTGCAGACTATGCGAAGCGAGAATCGACGATATCGACTCCCTAAAACATCACCTCACTACCTCGCACGATGTCAAACTGCACGAAGTTAGCAACGAGTTCCTAAAATTCAAACTAACGGTCAATAGTTTAACATGTATAGAGTGTAATTCAACGTTTAGTTTTTTCCACGCGTTAAAAAAGCATATGGCCGAGCATTTCGGCAGTTGCATATGCGATGTATGTGGCGCGCATTACTTCGAAGAACGCATGTTGAGTTTGCATATGCGATGTCACCAGAAAACTGATGAGGAATTCGCTTGTGACGAGTGCGGGAAGACTTTCAAATCCAAACACAGTAGGAACTTGCACGTAGCAAGGTTGCATCGCAAAGAGGCCGCATACGAGTGCAATAAATGCGACGAAGTGTTCTATTCATATTCTCTAAGATACAGACACATGATTGAAGCTCACGGGGAGCGTAGACTGTTTTCGTGCGAGCATTGCGATAGGGTATATGACAGTAGAAAATCATTGAGAGAACATAATAGACGGTCGCATCTGAAAATCTTCAGGCATCAGTGTGAAATATGCGACAAAAGGTTCTACCTACCTTCCAGGCTGAAAGAACATATGGCCACGCATACTGGCGAGAGAAACTTCAGGTGTGAATACTGTGGCAAGAGCTATCCTAGATTGCGAGGCCTCAAAGTCCATATGCAAAGTCATAGTGCGGATAAAAGGTACAAGTGTACGCTGTGTTCTGCGTCATTTACACAGAACGTCAACTTGAGGAGTCACGTCAGGAGGCAGCATCAGACGCCGGATATGGAGGACCCGTATCCGGAATAA
- Protein Sequence
- MSVNNQKGPVFDPGLCRCCGALKKCRVLNVEYDWRGQKEVYCDMFVDCFGLMLSNLDGEPLERLICATCVSRLREASAFRLQVLQCEQTLLQAKIHLHGDEAAVSSIKKEEPQIKVEVQVTAEPAQDNDAFPNDEPHHADSGSDHAANDSQDDNTPLSTMKSPKKSPKLKKMKTKKKLKAEKKKNCLSQEKDRRQMLASIAEISEQLKRMHEDEIQLKPPKVMDNDHKGFVNAVAIVQNSYVCPFDNSFSDYYCVYCRGMYTDPDKLREHTLTHDPTAFNEYALTKKRLMVDIQRIDCRLCEARIDDIDSLKHHLTTSHDVKLHEVSNEFLKFKLTVNSLTCIECNSTFSFFHALKKHMAEHFGSCICDVCGAHYFEERMLSLHMRCHQKTDEEFACDECGKTFKSKHSRNLHVARLHRKEAAYECNKCDEVFYSYSLRYRHMIEAHGERRLFSCEHCDRVYDSRKSLREHNRRSHLKIFRHQCEICDKRFYLPSRLKEHMATHTGERNFRCEYCGKSYPRLRGLKVHMQSHSADKRYKCTLCSASFTQNVNLRSHVRRQHQTPDMEDPYPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00074822; iTF_00075833; iTF_01282679; iTF_01279599; iTF_01125784; iTF_00076877; iTF_01124878; iTF_01280697;
- 90% Identity
- -
- 80% Identity
- -