Basic Information

Insect: Pyrausta nigrata
Gene Symbol: -
Assembly: GCA_949316185.1
Location: OX438950.1:2746799-2772462[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00076 0.069 14.6 0.9 1 23 248 270 248 270 0.98

2 11 0.01 0.9 11.1 1.0 2 23 278 299 277 299 0.95

3 11 0.31 28 6.4 2.8 1 23 330 353 330 353 0.91

4 11 0.0013 0.12 13.8 0.1 1 23 357 380 357 380 0.94

5 11 1.9 1.7e+02 3.9 0.3 3 20 412 429 411 435 0.84

6 11 5.3e-05 0.0048 18.2 1.1 3 23 445 465 444 465 0.99

7 11 0.044 4 9.0 0.0 2 23 489 511 489 511 0.97

8 11 0.00015 0.013 16.8 4.5 1 23 522 544 522 545 0.95

9 11 1.8e-06 0.00017 22.8 1.1 1 23 551 573 551 573 0.98

10 11 0.00034 0.03 15.7 0.4 1 22 579 600 579 604 0.93

11 11 1.7e-05 0.0015 19.8 0.1 1 23 610 633 610 633 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00076	0.069	14.6	0.9	1	23	248	270	248	270	0.98
2	11	0.01	0.9	11.1	1.0	2	23	278	299	277	299	0.95
3	11	0.31	28	6.4	2.8	1	23	330	353	330	353	0.91
4	11	0.0013	0.12	13.8	0.1	1	23	357	380	357	380	0.94
5	11	1.9	1.7e+02	3.9	0.3	3	20	412	429	411	435	0.84
6	11	5.3e-05	0.0048	18.2	1.1	3	23	445	465	444	465	0.99
7	11	0.044	4	9.0	0.0	2	23	489	511	489	511	0.97
8	11	0.00015	0.013	16.8	4.5	1	23	522	544	522	545	0.95
9	11	1.8e-06	0.00017	22.8	1.1	1	23	551	573	551	573	0.98
10	11	0.00034	0.03	15.7	0.4	1	22	579	600	579	604	0.93
11	11	1.7e-05	0.0015	19.8	0.1	1	23	610	633	610	633	0.98

Sequence Information

Coding Sequence: ATGTATGACTTGCGGCTATATCCATTGGGTCATTACGCGAAATCAATAGAAACACTGAGTTTTAAGGAACTTCCACCATATGCATGTGTTGAGTGTGCCACCTTGATCAAGAATACATACTTCTTCATGGAAAAATGTATGAGGGGTCAGACTGCACTATGTAATTTGATGTGCTCCATTGAAATGGTAACAGAAAATGACATAAGAAAACTCAACAGACGTGAATTAAATCTGGTTTCCAATCTGTCATGCCATAGTGTTAGTGAGGACAGCATCATCAATGTTTCATATGATGGATCTGAGATATTCGATGTTAAGCATGAGATATGCAACGAAGATGCAGATGATGAATCCAAGTATGATATAAGTATAGATTTTGTCAAATGTGAAATTGGTCACGAGGAATCTCTTTCCTCCAGTGATGACGACAAGAGCAAACAAGAATTGAAACcaaagatccataaaaataaagaaaagagtgCAGATAAAGCTAACAAagcagtgaaaaaaaatactaagGCTGAGATTAGTGAAGAACCAAAAAAAGAGCCATCTAAAAAGCCTCGCAAAGCTCGAGCCAAGCCTCGGAAGGCCGCTGCGCCTAGAGGGGTAGCAAGCACTGTTggagatgatgatgacgacaaTACTGAGGAATACGCCACTGTCATTGTGCTCTCGAAAGAGGAACAGTTGCAAGAGATAGAGAAGCGCAAGACGGCGGCCAACTACCTGAACGGGAGGTTTAAGTGCGAGATGTGCTTCAAGGGCTTCATCAGCGAAGTGGCTTACAAGAATCACCTCTCGCGTCACGACCCGGAGCGAGGGGATGTAGAGTGCCCAATTTGCAAGTTCCGCTTCAAGTTCAGGAGGCAAATGGTGCACCACGCAGCCATCCACGCGACGAAGTTTGCCTGCAAGGCGTGCTCTCATGTCTCCTCGTGCCGAAATCAAGCCAAGCGGCACAACCAATATCACAAAGGCGTGAAGTACATGTGTAAACACTGTGGTGAGATTTCGTCCACGCAGAACGGGCACCTGAGCCACCTGCGGCTGAAGCACCCGTCGGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCGCGCGCGGCCTCGTACTGCACAAGACCATGATGCACAAGGACGTGCCGGAAACGGATGAAGCTAAAGACAACAAAAATGAAGAGCAAACGGATGAAGCTGCAGATAATAAGAACGAAGACGGCCCGTACTGCGCGGAGTGCGACGTGAAGTTTGCGTCGCTGGAGGCGCACCGCCGCCATCTTGTCACCTCGGCCAAGCACACGAAGGAACAGGACTCTAAACACGGGTGCCGCGACTGCGGGGAGACGTTCGCCAGCGATGAGGACCTGCGGCGGCACCACCGGAGCCACGCGATCAAGGCCCCTGAGGGCTACTACAAGAACAGGAAGACTCCCCACTACGGCCGCTCGTTCCCTAGGACTTGCACGCTTTGTCCCGAGTCTGTGGAGAGTCCGCGCGCGTACTGGGCGCACTTCCGGCGCGCGCACCCCGGCCGGAGCTACCCCGTGCTGTGGGACCACGTGTGCGACGTGTGCGGGAAGACTTTCCAGACCAACGCGTTTCTCAAGTACCACAGCCGCACGCACCACACCGAAGAGCGTTCCTTCAAGTGCTCGATCTGCCCCAAAGCGTTCTACACGCGCAACAACCTGACCGTTCACGAGAAGTCGCACACAGACCGTCGGCCGTTCGCCTGCGAGCTGTGCAACAAGAGCTACAAGATCAAGAGCGCGTTAGACAGGCATCTACGCTCATCGGCCAGCCACGAAGGCCTTCGTCCGTTCAAGTGCGAGGTGTGCGGCAAGGGCTTCAGCGAGACCAGCAACGTGCGCGTGCACGTGCTCACCGTGCACCTCAAGCAGCCCCCGCCCTACCCGCGCCGCAAGCCGCGCTCGAGACGTCGTCCGCCAGACAAACCGCTCTGTTAG
Protein Sequence: MYDLRLYPLGHYAKSIETLSFKELPPYACVECATLIKNTYFFMEKCMRGQTALCNLMCSIEMVTENDIRKLNRRELNLVSNLSCHSVSEDSIINVSYDGSEIFDVKHEICNEDADDESKYDISIDFVKCEIGHEESLSSSDDDKSKQELKPKIHKNKEKSADKANKAVKKNTKAEISEEPKKEPSKKPRKARAKPRKAAAPRGVASTVGDDDDDNTEEYATVIVLSKEEQLQEIEKRKTAANYLNGRFKCEMCFKGFISEVAYKNHLSRHDPERGDVECPICKFRFKFRRQMVHHAAIHATKFACKACSHVSSCRNQAKRHNQYHKGVKYMCKHCGEISSTQNGHLSHLRLKHPSEFICGVCGYSFVSARGLVLHKTMMHKDVPETDEAKDNKNEEQTDEAADNKNEDGPYCAECDVKFASLEAHRRHLVTSAKHTKEQDSKHGCRDCGETFASDEDLRRHHRSHAIKAPEGYYKNRKTPHYGRSFPRTCTLCPESVESPRAYWAHFRRAHPGRSYPVLWDHVCDVCGKTFQTNAFLKYHSRTHHTEERSFKCSICPKAFYTRNNLTVHEKSHTDRRPFACELCNKSYKIKSALDRHLRSSASHEGLRPFKCEVCGKGFSETSNVRVHVLTVHLKQPPPYPRRKPRSRRRPPDKPLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -