Basic Information

Insect: Pyrausta nigrata
Gene Symbol: -
Assembly: GCA_949316185.1
Location: OX438963.1:3693741-3696633[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.017 1.6 10.3 0.1 3 23 2 22 1 22 0.97

2 17 0.3 27 6.4 1.2 1 23 93 115 93 115 0.91

3 17 0.0026 0.23 12.9 0.1 2 23 143 165 142 165 0.96

4 17 0.12 11 7.7 2.2 2 23 186 208 185 208 0.92

5 17 0.017 1.5 10.4 2.1 3 23 215 236 213 236 0.95

6 17 0.0073 0.66 11.5 3.2 1 23 240 263 240 263 0.93

7 17 0.25 23 6.6 2.3 3 23 267 288 265 288 0.96

8 17 3.7 3.4e+02 3.0 0.1 2 19 295 312 294 315 0.91

9 17 0.0058 0.53 11.8 2.5 1 23 361 384 361 384 0.96

10 17 2.1 1.9e+02 3.8 0.1 2 23 413 435 412 435 0.93

11 17 0.55 50 5.6 1.3 1 23 457 480 457 480 0.94

12 17 0.00059 0.053 14.9 0.6 3 23 487 508 486 508 0.91

13 17 0.00073 0.066 14.6 2.0 1 23 513 536 513 536 0.91

14 17 0.002 0.18 13.3 0.4 2 23 542 564 542 564 0.91

15 17 7.1e-05 0.0064 17.8 3.0 1 23 568 591 568 591 0.97

16 17 0.00071 0.064 14.7 0.4 2 23 598 619 597 619 0.96

17 17 0.0052 0.47 12.0 1.5 1 23 625 647 625 647 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.017	1.6	10.3	0.1	3	23	2	22	1	22	0.97
2	17	0.3	27	6.4	1.2	1	23	93	115	93	115	0.91
3	17	0.0026	0.23	12.9	0.1	2	23	143	165	142	165	0.96
4	17	0.12	11	7.7	2.2	2	23	186	208	185	208	0.92
5	17	0.017	1.5	10.4	2.1	3	23	215	236	213	236	0.95
6	17	0.0073	0.66	11.5	3.2	1	23	240	263	240	263	0.93
7	17	0.25	23	6.6	2.3	3	23	267	288	265	288	0.96
8	17	3.7	3.4e+02	3.0	0.1	2	19	295	312	294	315	0.91
9	17	0.0058	0.53	11.8	2.5	1	23	361	384	361	384	0.96
10	17	2.1	1.9e+02	3.8	0.1	2	23	413	435	412	435	0.93
11	17	0.55	50	5.6	1.3	1	23	457	480	457	480	0.94
12	17	0.00059	0.053	14.9	0.6	3	23	487	508	486	508	0.91
13	17	0.00073	0.066	14.6	2.0	1	23	513	536	513	536	0.91
14	17	0.002	0.18	13.3	0.4	2	23	542	564	542	564	0.91
15	17	7.1e-05	0.0064	17.8	3.0	1	23	568	591	568	591	0.97
16	17	0.00071	0.064	14.7	0.4	2	23	598	619	597	619	0.96
17	17	0.0052	0.47	12.0	1.5	1	23	625	647	625	647	0.97

Sequence Information

Coding Sequence: ATGTGTTTGTACTGCGGGAAACCTTCGAACGAGGCTTCAGACATAAGAGCACACACAGAGACACACGGCAAAGTCGGACCGATCGAACTCGCGCAAGCCATATCCAAGTTGCGCGCCACAGAAAAAGTCATCAAGATAGATATATCGCAGCTCATCTGCAAGCTATGCTATGAAAATGGGCCGGCAAAGGCATTAAATGCCAGTGAAGTCAGGAGGACGAATCTGCGAATAATATTCAACAACACGACACTGATTCCTTTTAAATGGAGGGGCAAATACCTTTGTTTTTACTGCGGGAATGACGTAACCGATTGTAACGAACTGAGACAGCATACTGTCGAGCATGGCGACTGTACTGACACAGACCGAGCTATAAGACTAGTCAAATCTGGAGATGTCGAAGTAAAGATAGACGTTTCAGATATAACTTGCAAACTTTGCGACAAATCTTTTGTGGTTTTCGACGATATTCTAACTCATCTCATGATGGATCATATGTTGCCGTACAACAGAGATGTCCCACTGTTTCTGACTACGTACCGTCTGGTTGATCTCAAATGCGTGTTCTGTGATAGGAGTTACAACTATTTCCATAAACTAGTATCTCATGTTAACGACACACACCCAGTCAACGATCTGTTTTGTCTGGTTTGCAATCAGAAATTCAACAAAAAGAACGATCTCGATACCCATACTCGAAACCGTCATAGAGttaagtatttttgtaataaatgcaCATTGACTTTCGATTCGAGTGCTGCGTTGCACAAGCATAAGTCAAATTCTCACGGTTCACATTGCAATATTTGCTTCGAAGCGTTTCCTACAGACCATAGCAGGGTGAACCACATTAAAAAAGTCCATTTTGATAACGACCTCTTACAATGTGGCTTTTGTCTCAGAGTTTTAACAACCAAAATAGCGTTTCTCAATCACGCTGCTAAATGCAACGTTAAAGGTACCGTAGATATCAAAACCATTGCACGCGATACTAAACCTACAGTAGTTCAGATAAGAAATAATATCACGTGTATCATCAACATGTCGACCGCTATACCTTTTAAGTTTTACATGAACAACTTCAGATGCTTCTATTGCGTTAAAGATTTTACCGAATGTGATGATCTGAAGGAGCATACAGTCACGGAACATCCGGTGTGTGACGTCAAACTGAAATGTTTGCAGCTCAGGAACAGACAGTCTGGTATAAGAGTAAAAGTAGATGTCTCGACGCTTTCTTGTAAAGTTTGTTATGAGCCAATGCAAGATTTGGAACATTTGATAGACCATTTAATAGTCGAACACAAAGCGTCTTACGATAAAACCGTCGACCATCACTTTGAGCCTTTTAAGCTGATCAAAGACAACTTCCCGTGTCCGTTTTGCATTGAGGTATACAGATATTTCTGTACTCTTTTGAGGCATATAAGCGAAAACCACTCAGAAAATAGGGCCATTTGCTCATATTGTGGGGTCACTTTTAGAACGGAATCCAATTTGCGATTTCATATTTCTCTGAAGCATAACACTCCCAGCCACAAGTGTAGCGTTTGCGATTCGAGTTTCCCGACGAAACGACATCTACGGGAGCATGCCGGTTCTGCCCACGGGAGTAAAGTTGCCAAGTGCTCGGAATGTTCGGAGAAATTTAAGTCCCCGTACGCAGTGCAGCGACACAAAATCGATGTTCATGGCATCGGGCATAAATGCTCCTACTGCGGTAGAATGTTCCCAAAGAAATCTTTTATGGTGGACCACATCAGACGGTCGCATCTCAAAGAGAAGAACGTGGAGTGTCCTGTCTGCTTTCAAAGGTTTTTCAACAAATACATGGTCAACAGACACATGGTTATGCACGTTGGCGAAAGGAATTACCATTGCGACATCTGTGGGAAAAAGTTTCTATGGAAAAAGAATCTTATAGGGCACATGTCCACGCATTTAAAGAATAATCCAGCACCAATTTAG
Protein Sequence: MCLYCGKPSNEASDIRAHTETHGKVGPIELAQAISKLRATEKVIKIDISQLICKLCYENGPAKALNASEVRRTNLRIIFNNTTLIPFKWRGKYLCFYCGNDVTDCNELRQHTVEHGDCTDTDRAIRLVKSGDVEVKIDVSDITCKLCDKSFVVFDDILTHLMMDHMLPYNRDVPLFLTTYRLVDLKCVFCDRSYNYFHKLVSHVNDTHPVNDLFCLVCNQKFNKKNDLDTHTRNRHRVKYFCNKCTLTFDSSAALHKHKSNSHGSHCNICFEAFPTDHSRVNHIKKVHFDNDLLQCGFCLRVLTTKIAFLNHAAKCNVKGTVDIKTIARDTKPTVVQIRNNITCIINMSTAIPFKFYMNNFRCFYCVKDFTECDDLKEHTVTEHPVCDVKLKCLQLRNRQSGIRVKVDVSTLSCKVCYEPMQDLEHLIDHLIVEHKASYDKTVDHHFEPFKLIKDNFPCPFCIEVYRYFCTLLRHISENHSENRAICSYCGVTFRTESNLRFHISLKHNTPSHKCSVCDSSFPTKRHLREHAGSAHGSKVAKCSECSEKFKSPYAVQRHKIDVHGIGHKCSYCGRMFPKKSFMVDHIRRSHLKEKNVECPVCFQRFFNKYMVNRHMVMHVGERNYHCDICGKKFLWKKNLIGHMSTHLKNNPAPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -