Pnig016455.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438948.1:16709796-16722423[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 1.6 10.3 3.4 2 23 33 54 32 54 0.96 2 13 0.00012 0.011 17.1 1.9 1 23 92 115 92 115 0.97 3 13 0.00025 0.022 16.1 1.7 1 23 117 139 117 139 0.98 4 13 0.52 47 5.7 0.0 1 19 176 194 176 198 0.72 5 13 0.11 10 7.7 0.8 3 20 230 247 228 251 0.87 6 13 4.3 3.9e+02 2.8 2.7 3 19 260 276 258 280 0.80 7 13 0.00013 0.012 17.0 0.3 1 23 286 309 286 309 0.92 8 13 0.002 0.18 13.2 0.4 1 23 320 343 320 343 0.95 9 13 0.00021 0.019 16.4 0.0 2 23 348 371 347 371 0.95 10 13 0.0005 0.045 15.2 0.2 1 23 402 424 402 424 0.95 11 13 0.00022 0.02 16.3 5.6 1 23 430 452 430 452 0.97 12 13 2.6e-05 0.0024 19.2 2.2 1 23 458 480 458 480 0.98 13 13 3.1e-06 0.00028 22.1 1.2 1 23 486 509 486 509 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCTCATTTAAAGTGGGTCCCAATAGGGACGGCCACGGACCAGCCTCAGCTACATCTTAAACTTACTACCATCGACAAAATCGGTGGTATATATTGCCATGTCTGTCACATAACATTTGGAAACAAAAAGGATTATGACACTCATTACATTAAGCACCAAACAGGGAGCACAGATATCACATACACTTGTTTGGTTTGCCGTAAAGATATAGTGGGCTATCCCAGCTTCCGAGGACATTGTTACACAAAACATGTCATGAAAGATAAATTCAAATGTAATCAGTGCGACAAGCTGTTTTCAAAACAAACTGCACTCCAAAGCCATTTTGAAACAATGCATCAATTTAAATGTTCAACTTGTCAAAATAAATTCAAATCCCAAAAAGAACTTATCATGCATCAAATAATCCACAAAAATGATCAGTTCAACAATCCACCATACAACTGTCAAGTTTGTAATAAGCAAATCGAGGACACCATTGATTGCGAGCAACACTTAGAGGACCACAGCACCACATCTTACTCTTGCCCGATTTGCGATGAAAGCATTAGCAACATACAAGACGGTGCTATTCATCTCGCTAAGCATTTTGGCGAAGTACTTACTGAAAATGATGAGTCCGATTCTGAGGAAAGAGAATTTTCAAATGATAGCTCAATAGATCTTCTCGGTGGCATTTTCTGTTCACTCTGCAACAAAAACTTCAAAGCCAGATCAGAATTTGATACACACTTCGTACTTGAACATGAAGATAAGAACATTATTTATGGCTGTAATATCTGTGGAAAGGAATACGATAAATACCTTTTCTTCACAAACCACTGCTACAATCATTGTGCCAAAGATAAGTTcaaGTGCGAAGTGTGCTCGAAGCGTTTCCCTCGCCTCTCGCTGCTCGTGATCCACACGGAGGCGTACCACTCTGGCGCGCGAGGCGAGGCGGCGTACCCGTTCGCGTGTCGGCAGTGCGGCCTgcgcctgcgcaccgcgcggcAACTGCGTGACCATAGACGTGCAGAGCACAACGCCAGCAGCGAGTGTCCTGAGCAGGAGTGTGGGAAGATCTTCGACACGCCGAAAGAGCTGGTCCTCCACTTGAAGGAGCACGCGGGCGGGGCCTGGTGCAGGCGCTGCGGCCTGCGCTTTGCGTCGCTGCCCGCCTGCCTCAAGCACCTGCCCGTACACCGCCGCACGAGATACGCCTGTCCCGTCTGCTCGCGCTCCTACGCCGAGAAGTACTTGCTCATGAAGCACGTCACCCAGCACTTCTCATCCGTGCTCCACGTGTGCAAGATCTGCGGGCGCGTGTACTCCCACCGCCACCGTCTCATGCAACATCTGAAAGTTCACAACGTGGCCAAAGAGCATACATGCGACCAATGCGGCAAGGGGTTCGCCAAGAGGTTTCTCCTGAAACAGCACCAGAACATACACACCGGCGCCAAACCTTACAAATGCACCAACTGCCCGAAAACATTTGCTAGCGTACCCAACTTTAAAAAACACATGAAAAACATACACAAAATTACTCGAATCGATATAAAAGTCTACTACAATGAAGTTAATGATAACAAAGAGCAATCAAACGAGTCTGTTAACCCGTCGAGTTCGGAGTCGTTGGAGGCTTCGGACATACCGAACGAGTTTGACGAGTCTAACGAGTTTGACGAGTCGAGCGAGTCGTGTGACTGGAAGATTGACGAGTTGGACCCGCATGTCGTGCGGATGATCGAGCAAAACCTGGAGGCGCTGCATGCGGGGACGAATATCGGCGAATTCGAGGCAGACCTCTGGGTGCCGAGCCCGACTGTTCCGATTGAACCCATCGAATTCCCCCCGTCGGCCCCCGCGCCGCGCGAGTACGGTCCCGAGCTGGTGAACCTGGACGACCACTGCTTGCCTCACATCCCGCCACTGCTCACCACCAACCGCCAGCCTCCACTTTCGCCACACGCGTCGTCTCTGTCGCCCCTGGCCGTGGCAGACAAGTGGGAACCGCCCGTGCTCACCAAGCTGGCGGATCTGGCCTACGCGGACCTAGCCGAGGTGATGAACGCAGATATATTTTAG
- Protein Sequence
- MAAHLKWVPIGTATDQPQLHLKLTTIDKIGGIYCHVCHITFGNKKDYDTHYIKHQTGSTDITYTCLVCRKDIVGYPSFRGHCYTKHVMKDKFKCNQCDKLFSKQTALQSHFETMHQFKCSTCQNKFKSQKELIMHQIIHKNDQFNNPPYNCQVCNKQIEDTIDCEQHLEDHSTTSYSCPICDESISNIQDGAIHLAKHFGEVLTENDESDSEEREFSNDSSIDLLGGIFCSLCNKNFKARSEFDTHFVLEHEDKNIIYGCNICGKEYDKYLFFTNHCYNHCAKDKFKCEVCSKRFPRLSLLVIHTEAYHSGARGEAAYPFACRQCGLRLRTARQLRDHRRAEHNASSECPEQECGKIFDTPKELVLHLKEHAGGAWCRRCGLRFASLPACLKHLPVHRRTRYACPVCSRSYAEKYLLMKHVTQHFSSVLHVCKICGRVYSHRHRLMQHLKVHNVAKEHTCDQCGKGFAKRFLLKQHQNIHTGAKPYKCTNCPKTFASVPNFKKHMKNIHKITRIDIKVYYNEVNDNKEQSNESVNPSSSESLEASDIPNEFDESNEFDESSESCDWKIDELDPHVVRMIEQNLEALHAGTNIGEFEADLWVPSPTVPIEPIEFPPSAPAPREYGPELVNLDDHCLPHIPPLLTTNRQPPLSPHASSLSPLAVADKWEPPVLTKLADLAYADLAEVMNADIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -