Pnig031367.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438964.1:6460547-6471985[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00042 0.038 15.4 0.6 1 23 134 157 134 157 0.96 2 10 0.00046 0.042 15.3 0.1 1 23 163 185 163 185 0.96 3 10 0.00031 0.028 15.8 1.9 2 23 221 243 220 243 0.96 4 10 0.00013 0.012 17.0 1.8 2 23 246 268 245 268 0.95 5 10 1.2e-05 0.0011 20.2 1.4 1 23 274 296 274 296 0.97 6 10 1.6 1.4e+02 4.1 0.3 3 21 307 325 306 330 0.92 7 10 0.0016 0.15 13.5 3.3 1 23 335 358 335 358 0.94 8 10 0.00039 0.036 15.5 0.5 1 23 364 387 364 387 0.97 9 10 3.4e-06 0.00031 22.0 2.1 1 23 395 417 395 417 0.98 10 10 0.00028 0.025 16.0 0.4 1 23 423 446 423 446 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGAAATATTTGCCAAACGTGTTTGAGCATAAATCGTCGTTTGATACCACTGGCGAGAATAAGAGGTTTATTACAAGAAACCCATTTTATACAGATGACCGAAAATCGGGGGATCTGTTGGGAGTGTCACcacattatattaaaatattttaaattcaagtTACAAGTTTGTAAAGCTCAAGAATCCATTAAATTGAATCTTCGAAAGAAACTGAAGGCAGAAAGAGAAAAGAAAGTAAAAGATAAgaattcaaaaataaagaaaggTGAAAATAAACCAGACATAGACCAGGTAGAATTAAGAAAGAAATTCTCTACATTAATGTACACTGAAGAAGAAATGCAAAAACTTAGAGAAGAGAAGAGAAATCATCCCAATTACAAGAAAATACCATTCAAATGTGATAGTTGTGTTCTTGGATTTACAAAAAAAGATAACTTAAATGCTCATGTGGAGAAAAAACACAATCAGAAGTTACTCTACACCTGTGACGTATGCCTCACCCGTTTTTCACGCAAGATGCCCCTAGCTCGGCACATAGCAGCTCACTTCGTTCGTTACCGTTGTCGGCTATGCCCCTACGAGACCAGGGAGGAATGGAGCGTGCTCAACCACTGTCGCCTGAAGCACAGAACCGATGCTGAGGGCAGGATCCACTGCCCGCACTGTGAAATTGAAACCACATCTCAAGAAGATCTTTCGAAGCACATCAAAACACAACACGTATTGCACTGCAACGACTGTGGAGAGAAATTCAAAGCGAAAAACACTTTGAGGACGCATATATCTCGGATACACGGCGTGAAACGGGAATTCGTCTGCGAGATGTGCAGGAAAACATTCAAGACGAAATCTCGACTCGAATCGCACGTGGTGACTCACAACGCTGCCATAGCGAAGAAGCTGGCCTACTGCGCCACTTGCGATGTTCAGTACAAGAACATATACGTGTACCGGAGTCATCTGAGGAACAGCGCCAATCATTCGGCGAAATCGTACCCCTGCCTGGAATGCAACAAGCATTTCGTGTCAAAAGTGTATTGGAACAAGCACTACAACTTCTTCCATTTGGGCAAGTCCAAATTCAGTTGCGAAATCTGTAGCAAGATGTTCATATCGGAGTGGCGGTTAAAAGCTCATAATCAGACGCAGCACGGCCATAGTCGCTCCAGGAATCACCAGTGCAACGAGTGTGGAAAGAAGTTCTTTACGCTGCCGACGTTGCGCGCGCACCAGCTGACGCACTCCGCGCAGCGCTCGTACATGTGCGAGGACTGCGGCGATACATTCAAGCAGCGGCCCGCCCTTTACAACCACTCGCGACGCGTACACGCTCGCAAGTGA
- Protein Sequence
- MERNICQTCLSINRRLIPLARIRGLLQETHFIQMTENRGICWECHHIILKYFKFKLQVCKAQESIKLNLRKKLKAEREKKVKDKNSKIKKGENKPDIDQVELRKKFSTLMYTEEEMQKLREEKRNHPNYKKIPFKCDSCVLGFTKKDNLNAHVEKKHNQKLLYTCDVCLTRFSRKMPLARHIAAHFVRYRCRLCPYETREEWSVLNHCRLKHRTDAEGRIHCPHCEIETTSQEDLSKHIKTQHVLHCNDCGEKFKAKNTLRTHISRIHGVKREFVCEMCRKTFKTKSRLESHVVTHNAAIAKKLAYCATCDVQYKNIYVYRSHLRNSANHSAKSYPCLECNKHFVSKVYWNKHYNFFHLGKSKFSCEICSKMFISEWRLKAHNQTQHGHSRSRNHQCNECGKKFFTLPTLRAHQLTHSAQRSYMCEDCGDTFKQRPALYNHSRRVHARK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -