Pnig028630.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrausta nigrata
Gene Symbol
Hivep3
Assembly
GCA_949316185.1
Location
OX438960.1:10983141-11020600[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5 1.4e+02 4.2 1.4 3 18 59 74 57 74 0.91
2 12 0.012 1.1 10.8 0.1 1 23 510 532 510 532 0.95
3 12 0.00034 0.031 15.7 2.7 1 23 546 568 546 568 0.98
4 12 1.5e-05 0.0014 19.9 0.9 1 23 574 596 574 596 0.99
5 12 3.5e-05 0.0031 18.8 1.2 1 23 603 625 603 625 0.99
6 12 3.5e-06 0.00031 21.9 0.4 1 23 631 653 631 653 0.93
7 12 3.1e-05 0.0028 18.9 1.1 1 23 659 681 659 681 0.97
8 12 8.7e-06 0.00078 20.7 0.2 1 23 687 710 687 710 0.96
9 12 0.06 5.4 8.6 9.2 1 23 716 739 716 739 0.96
10 12 0.0003 0.027 15.8 1.3 2 23 746 767 745 767 0.97
11 12 7.7e-05 0.007 17.7 1.0 1 23 773 795 773 795 0.96
12 12 0.026 2.4 9.8 0.1 1 23 801 825 801 825 0.92

Sequence Information

Coding Sequence
atggaACGAAAACAAAGCTGTTTCATCTGCAACACCAATATTGGAGCATTACCTAAGAACTGCATTAACATATTTGAGACAACAAACTCGTTTGAAAAGCTTAAACTACCAGAATTACTCGGTGAAATCATCGGGAAGCCAATGACTAAGTCGTCTCTAGCCTCTCATATCATTTGCAAGAAATGCAACTGGTCATGCGTCAAGTATGATGATTTACAAAAAAGACTTGAAGCCATAGCGTCAGAAATAAAAGACAATTACCACAGAACATCGCAACTGCAAAAGGAAAACAGTAATCTGGTGGACCGTAAAACCAAGAAAGAACCCAGACCGATAGTACTACCAAAGTCAAAACTACAGCCATTGCCCGCTGACTTTGTGCTGGACGTTGAAAAAATTGTAGCGGCATCAAAATCTGGCATGCTGAGTGGTGTGGGCACAACAGTTTCTAGTTATGTGATTGATGTGGACAAGTATCAGATGTCGAAGTCAAATGATGCTGATGAAATGGCTAGCTTGCTTAAGATACCAACTACCACATCTAAAACTGTGAACCTCATGGCCACTATTGGCACAACAGTCCTCAATAACACTCTCACATCAACAATCTCATCAGAATCGGACCCATTAGCCATTGCAACTTCAGACGTCAACCTGATAATGTCACCGGTGAAATCAACGGATTCAACCAATATAGCTGCAACGCTGCAAAGcaaaTCAACTAAGAATCCGATGCTGAGTTTTAACGTGGATTCGTTGCCTAAAGACTTTTTAGCTTCAAGCACTAAAGATGagacaatgaaaaaaaacagtaatgagTCATCGGAGGATGATACGGAGAATAATGATGAACAACCAATGGAGATTGATGAAGattgTTCCCTGGCTGTAGTACCGGTAACAACAGACGACGATGGAAAATATGTCTTCCAAGTTGACACCAACAAATCCAAATCGAACTACCTAGACCTAAACCTGCTGATGTCGCCAGATAACCAGGACCCGAACGACAGAGATGGCAAATACATACTGGATAAACTGCAGATACTGAAtgagaatgatgatgatgatgatgaacAGACAATAGTCATGAAGAACAGTGAGGGCACGACGATCATACGAATGGCCGCCGGCCAGAAGGTCGTGTACGATGGAGAGAATTTTGCATTCGTGCCCGACGGGGAGCAAGCGGACAACGATAGCCAAGattcaAACGACGAGTCGCAAATCGAGCTGCAAGTGTCGGGTGACGAAGAAACCGCCAACGCGATCATAGCCGCAGCTAAAGAGCAAGGCGGCGCGTTCATAAAAGTGGAATCGGGAGAAATGTTCCGAGTCAAATCCGTTCAGAGCAAAGTGGACGATGAAGAGTCGCAAGCTGTGAAATTAATACAGATACAAAGTATTGTCGAAATGGAGGACGGCCAATATAAATGTCAGCTGTGTATTCAAACGAATAGCAAGCCATTTGTGGGCGATGCAGAGATGATTATGACGCATTTGAAAGCGAATCACAACGCTAGGGTGTATATCTGTCAGATATGTGGGGAGGTCATGAGGAGACGGACCGAGTATACTACGCATGTGGAGGCACACATAGACAAATCACGGCTATCGGCTCCCAAATCGAAGCTACACGAGTGTGATGTTTGCAAACGCAAATACAACTCGAGAACATTATTGGAAACTCATTTGAACACGCATACTGGCGCCAGGCCTTATACCTGCTCGGATTGTGGTAAAGGATTCGCCTCGAAATATACGAGGCAAGCGCACGAGAAAACACATTTGGATCGCCCTCGGCCATACAAGTGTAACATGTGCGGCAAAGCATTCCTCACGCTGCAAAACCTCACACAGCACGAGAAAACTCACTCGAACGTAAAGGAGTTCGTATGCACTATCTGCAACAAAGCCTTCTCAACGCAGCACAATCTCGAAGTCCACGGAGTGATACACACAGGCCAGAAGCCGTTCGCATGTTCGATGTGCCACAAGGCTTTCGCCAGACGGGCCGAAATTAGGGACCATTTGAGGACACATACAGGCGAACGACCATTCGCTTGTGACATATGCGGCGCTCGCTTTGCGCAACGCAGTAACCTTCTGTCGCACAAGCGCGTCACGCACAGCGACGACCGGCGCCACCACTGCGACAGCTGCTCGAAGAGATTCAAGCGGAGACgGTTATTGGAATACCACATCAAGTCGTGCCACACGGGCGAGCGGCCTCTGAAGTGCGACGTGTGCCGCGCCACGTTCGTGTACCCCGAACATTATAAGAAGCACCTCAAGATACACAGCGGCGAGAAGCCATTCGCTTGCGAGGTGTGCGGCAAAACGTTCAACTCTCGCGATAACCGCAACACCCATCGCTTCGTGCACAGCGACAAGAAACCATACGAGTGTTTGTCTTGCGGCGCAGGGTACATGAGGAAGCAACTACTTTACGCGCATATGAACTCcactggTCACGTAGCTGAATCAATAGTCGTAAATCAACCGAGGGTCATCAAGGCATCAGAAAATGGCGTACTAACACCACTGGTGGATGTTAACGGGCTAGAAATAAAAACGGATAAGCTGTCCAACGCTATATTTGAAACCACTGAAGAGTTGGAATTAGATGAAAATGACATTCAATCAGTCGATAATCTGGAAGGAATTATTGAAGCGGGAACGGATGACAAACTAATCGATAATAAGCAACAAATTATAAGAACAGACGCGAAAGGGGACACCATGAGACTGATACAAGTGCAACTACCCGATGGGAAGACTGGATGGGTTGCAATAGACCAATGA
Protein Sequence
MERKQSCFICNTNIGALPKNCINIFETTNSFEKLKLPELLGEIIGKPMTKSSLASHIICKKCNWSCVKYDDLQKRLEAIASEIKDNYHRTSQLQKENSNLVDRKTKKEPRPIVLPKSKLQPLPADFVLDVEKIVAASKSGMLSGVGTTVSSYVIDVDKYQMSKSNDADEMASLLKIPTTTSKTVNLMATIGTTVLNNTLTSTISSESDPLAIATSDVNLIMSPVKSTDSTNIAATLQSKSTKNPMLSFNVDSLPKDFLASSTKDETMKKNSNESSEDDTENNDEQPMEIDEDCSLAVVPVTTDDDGKYVFQVDTNKSKSNYLDLNLLMSPDNQDPNDRDGKYILDKLQILNENDDDDDEQTIVMKNSEGTTIIRMAAGQKVVYDGENFAFVPDGEQADNDSQDSNDESQIELQVSGDEETANAIIAAAKEQGGAFIKVESGEMFRVKSVQSKVDDEESQAVKLIQIQSIVEMEDGQYKCQLCIQTNSKPFVGDAEMIMTHLKANHNARVYICQICGEVMRRRTEYTTHVEAHIDKSRLSAPKSKLHECDVCKRKYNSRTLLETHLNTHTGARPYTCSDCGKGFASKYTRQAHEKTHLDRPRPYKCNMCGKAFLTLQNLTQHEKTHSNVKEFVCTICNKAFSTQHNLEVHGVIHTGQKPFACSMCHKAFARRAEIRDHLRTHTGERPFACDICGARFAQRSNLLSHKRVTHSDDRRHHCDSCSKRFKRRRLLEYHIKSCHTGERPLKCDVCRATFVYPEHYKKHLKIHSGEKPFACEVCGKTFNSRDNRNTHRFVHSDKKPYECLSCGAGYMRKQLLYAHMNSTGHVAESIVVNQPRVIKASENGVLTPLVDVNGLEIKTDKLSNAIFETTEELELDENDIQSVDNLEGIIEAGTDDKLIDNKQQIIRTDAKGDTMRLIQVQLPDGKTGWVAIDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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