Pnig029218.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- Zfa
- Assembly
- GCA_949316185.1
- Location
- OX438961.1:10415506-10431271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00046 0.042 15.3 1.6 1 23 186 208 186 208 0.98 2 11 0.029 2.6 9.6 2.6 1 23 215 237 215 237 0.98 3 11 4.1 3.8e+02 2.8 1.3 1 9 241 249 241 264 0.67 4 11 2.7e-06 0.00024 22.3 0.8 1 19 271 289 271 290 0.96 5 11 5.7e-05 0.0052 18.1 0.1 2 23 301 323 300 323 0.95 6 11 1.9e-07 1.7e-05 25.9 1.8 1 23 336 358 336 358 0.97 7 11 0.0017 0.16 13.5 0.6 1 22 364 385 364 389 0.92 8 11 0.0011 0.1 14.0 2.1 2 23 398 420 397 420 0.95 9 11 0.00076 0.069 14.6 0.4 1 23 426 449 426 449 0.97 10 11 1.6e-05 0.0015 19.8 0.5 1 23 458 480 458 480 0.98 11 11 0.003 0.27 12.7 0.1 1 23 486 509 486 509 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAAAAAGAAGAATTTGCAAAACTGCGATGCTGTCTTGGTTGTTTATCTCGCGGTGATGAAAGTACGATACAATCATATCAAGCCAAAAATGGGACTCTAAAATCTATATTTCAGACTGCTAATATAAATTTATGCGTTTTATGTCAACGTATTGCCCAGCGAACTGAGACATTCATCCAAAATGTTCAGAGTAACCAGATCTTATTGGAAAATTTTCATAATCAAATAATTGACTTAACATTTCTACAAGACAAAAGTAAAACTGGACCTATACTGAACCTATCATGCCGCCTGTTGGGTTGTATTGATGTAAGTGGAGCAGAGATAGGAAATAAAAATGGAGTATTTTCAGTGTTAAACACTCATGGGAGATCAAAAGCAGTGGAAATTAAATTGGAAATGAAGGAAGAAGACAGCATGTTAGAACATCTTGAAGGGGAGTTCGTTGATGATGATGATTTCAAAGCAGTTACCTTTTACATATCCAAAAAACAATGCATGGAAGAACGGGCTGTGATGATGAAGAGCTCCAAGTATCTAAACTGTGTGTTCCGTTGCGAAAACTGTGTCAAAGGGTTCACTTTCAAAGCCAGTTATGACAAACACATGGAAAAACATTGTGAGGCGAATGGGGATTATGAATGTGACATTTGTAAACAACGGTTGCCATCAGAGGAGAAGTTTCACAGTCACCGGAGATACCATCAGGTCAGGTACAAATGCACAGAGTGTGACCTGGTAAGGATATGCCAGAGGACTGTGGTTGACCACTACAACTCCTCGCATTTACAGGACGTCTGCCAGTATAGCTGTCCACACTGTGATAAGATCTTCAATCGACAAGGCTCTCTGCGCAAGCACGTATGGTACAAGCATAGCCTGATGAAGCGAGTTTCGTGCGCGTACTGCGAAAAGACGTACGCCAGCAAGGATGCGCTCAAGGCTCACCTGATAATgcggcatgctaaagaggtgTCAGGAGTGGAAGTGGCCAAGCGCTACGTCTGCCAAGAGTGCGGGAAGCCTTTCAAATCGCCGTCGCACCTAAAGAAGCATTCTATAAAACATTCGCTTAGCCGGGATTACTATTGCGTCGAGTGCGATAAAAGCTTTAAATCAGATGCAATACTACAACATCACCTGAAAACGGCATCACCACACGTCAACTACGCCGAGTTACGATTATCTTGTCAGCATTGCGAAAAGCGGTTTTCTATAAGAAGAGACTTGGACAGGCACGTGAATAGAGTCCACCTCAACATCAAGCCGTTCCAGTGCGATAAGTGTGAAAAGGCGTACGTGAACGGTTGGTCGTTGACGGAGCACAAGCGGCTGACGCACGAGGGCTACAAGCGGCCCATGAAGTTCCCTTGCAAGCTCTGCGATAAAGTCTTTGACCGCAACCAGATACTAAAGGAGCATATACGGACCCACACGGGCGAGCGGCCGTACCAATGCAGCCAGTGTGCAGCCTCCTTTAGCCAGCGCGGAGTACTGGCCACGCACGTCAAGCTTATACACTTGAAGTTGACGAGAGATGGTCGACCTAAGCCTTTAGTTCGACCAGTGTGA
- Protein Sequence
- MEEKEEFAKLRCCLGCLSRGDESTIQSYQAKNGTLKSIFQTANINLCVLCQRIAQRTETFIQNVQSNQILLENFHNQIIDLTFLQDKSKTGPILNLSCRLLGCIDVSGAEIGNKNGVFSVLNTHGRSKAVEIKLEMKEEDSMLEHLEGEFVDDDDFKAVTFYISKKQCMEERAVMMKSSKYLNCVFRCENCVKGFTFKASYDKHMEKHCEANGDYECDICKQRLPSEEKFHSHRRYHQVRYKCTECDLVRICQRTVVDHYNSSHLQDVCQYSCPHCDKIFNRQGSLRKHVWYKHSLMKRVSCAYCEKTYASKDALKAHLIMRHAKEVSGVEVAKRYVCQECGKPFKSPSHLKKHSIKHSLSRDYYCVECDKSFKSDAILQHHLKTASPHVNYAELRLSCQHCEKRFSIRRDLDRHVNRVHLNIKPFQCDKCEKAYVNGWSLTEHKRLTHEGYKRPMKFPCKLCDKVFDRNQILKEHIRTHTGERPYQCSQCAASFSQRGVLATHVKLIHLKLTRDGRPKPLVRPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -