Pnig013900.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438946.1:10885677-10928281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00058 0.052 15.0 0.2 2 23 112 133 111 133 0.93 2 12 0.00066 0.059 14.8 2.0 1 23 139 161 139 161 0.96 3 12 5.9e-05 0.0053 18.1 0.3 1 23 251 273 251 273 0.98 4 12 0.00088 0.079 14.4 0.0 3 23 351 372 349 372 0.90 5 12 0.0033 0.3 12.6 0.2 1 23 387 409 387 409 0.93 6 12 4.5 4.1e+02 2.7 0.0 5 23 446 464 445 464 0.89 7 12 0.0057 0.51 11.8 0.5 1 23 499 521 499 521 0.92 8 12 4.5e-05 0.0041 18.4 0.2 1 23 550 572 550 572 0.98 9 12 0.0009 0.081 14.4 0.2 1 23 578 600 578 600 0.97 10 12 0.00051 0.046 15.1 0.3 1 23 665 687 665 688 0.95 11 12 0.021 1.9 10.0 1.0 1 23 701 723 701 723 0.96 12 12 0.0015 0.14 13.7 0.0 1 20 891 910 891 913 0.93
Sequence Information
- Coding Sequence
- atggaGGGAGAGGAGTTCAACCTCCAGTGGGAGGAGGTTGAAGTAAAAgctCCAGGAGATATAATAGAGGAAAATGACCAAATGGCAGCAGAGAACCTAATGTACTTAGCACAGGATGTTGTGAGCTATGCAGAAACAGCAGAGCTAGATCCTAATGTTGAATGTGTCACAGAAGAAGTCATCACCGATGATTGGGTCATACCTGGAGGGCAAGAGAGAGTTGAGGTTTCTCTAGATCAGTTTACAAACCCAGTCTCTGATGTTAAAGAAGAAAATGATATTGATGTTCCGCTGCCTACAGATCAGGATGAGTACACCGCGATGCGGCCATGGCCATGTGACTTCTGCTCGCGTCGATTCCGCAAGAAAGCGGCGCTCATGAACCACATGGTGGCGCATCAGAACGACCGGCCGCACGCGTGCAACCTCTGCGGCGTGCGATATGTCCGCAAATGCGACCTCATCAACCATCTTAAAGTGCACGCTTTCGTGCCAGATAATGAGGATGCGATGGATTATGaAGAATTGTTAGACAATCAAGTAACTAAACCAAAGAAGAAAAGAGGAAGGCGGAAAAAGAATCCTGAACCTGTTGAAAACGGGATGTGGGAGAACATGACCTCTGCGCGGACGCAGCAGTGGTCGCGGCGGGCCCGTTCCCCCGCCAAGGCGCCGCCCACGCCGCCGCCTCCCCCCTCGCCGCCCTCGCCCCCCTCGCCGCCGCCGACGCCCTCCGACCCCTCGCGCCCGTTCGTGTGCCGCCACTGCGGCATTGGCTTCGCTAGGGAGAAGGCTCTGCAGTCGCATGCTAGGGTACACGGAGGCGACTCGCCAGTAGAATGTGGCGAGTGCGGCGAGCTGTGCTGGTCGCGGGAGGCGCTCGCCAACCACGCCGCGCACCGCCACCCGCACCTCCCCCCGCGCGCCGGACACCCCCCCGCGCCCTACCAGGGCGAGGACGAGGATGACGACATGGACTACCGTCTGTCGCCGGTGCCGCACGGTGGCAACGAGCGGATGTACGAGTCGGTCCGCGGGCCAGAGCTGTTCTGCCAGGACTGCGGCGTGGCCTTCCAGCGCGCCGACCTGCTGAGGCGGCACGTGGCCGCCGCGCACAGCTACAAAAGGCACGACAGCACTAGTAGCGCGTGGGGCGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACTGACGCGTTGCAGCTGCTCGCGCACGCCGAGGGGCACGCCGAGCGACACCACGCCACTCCCAGCTGCTCGCGCACTCCGAGGGACACGCCGAGCGACACCACGCCACTCCCAGgtaacacacgcacacacacacacacgtgggACGTGTGCGGCGAGAACTGCACCGACGCGTTGCAGCTGCTCGCGCACTCCGAGGGGCACGCCGAGCGACACCACGCCACTCCCAGCTGCTCGCGCACTCCGAGGGGCACGCCGAGCGACACCACGCCACTCCCAGgtaacacacgcacacacacacacacacacacgtgcgACGTGTGCGGCGAGAGCTGCACCGACGCGTTGCAGCTGCTCGCGCACTCCGAGGGGCACGCCGAGCGACACCACGCCACTCCCAGATTAAAAAAGACGTCTCGAGGTCGAAATAACGTATCATCAAGTAGTAGTTCAAGACAGTTCCCTTGTAGAGAATGTgGCAAAGTGTTCGGGTCGCGTAGCTCTCAACAGATCCACGTCAGGATCCACACGGGCGAGCGGCCGTACGCGTGTCGGTTCTGCTGGAAGGCGTTCGCGGACGGAGGCACGCTGCGGAAGCACGAGCGCATACACACGGGTGAGTGTACAGGGATGTTGGAATTAATGGGGTCTTTGCAGGCCAAGTGTTCGGGTCGCGTAGCTCTCAACAGATCTACGTCAGGATTCACACGGGCGAGCGGCCGAACGCGTGTCGATTCTGTTGGAAGGCGTTCGCGGACGGAGGCACGCTGCGAAGACGTTACTCCTGTTGACCGCGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCGTTCAACCAGCGCGTCGTGCTGAGAGAACACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCGCCAACGGCGGTCCTGCGTACTGCTGCGCGGTGTGCGGACGTACGTTACATTCCAGTCCAGACTTGGTGCAGCATCTCATCCAGCATTGCGACGCTAACACGGCTCTCAAACGACAGCCACAGACCGGCCCCCGCAAATACAAGCGGCGGCGGAAAATGAAAACCGAGGAGGTGTCCCCGTCCCGGCAGTCGTGGGAGCGCGAGCGCGGGTCCGCCTCGCCCGCCGCGTCGCGCACCCCCTCCCCGCGGTCGCGCTCGGCCACGCCCCCTCGCGCCGCGACCCCGCCCACGCCgtccccgcccccgccccgccGCCGCAAGCGGCGCGCCCCGCCCCCCGCGCCGAGACCCAAGATGATACACACGGAGGACCCGCGGCCGAGGACCAAGCAGGTTCGACAACGACGACCGCCACGGCACCCGGCCGACGACTTGCGCGCCATCCGGCCGCGCTCGCCGTCGCCGCCGCTGCCCGCGCGCCGCGCCGCCGTCGCCGTCACCCCCTCTCCCTCTCCCCCGCCCGCGCCTTCCCCCTCTCCGTCTCCCTCGCCCCCGCCGCCGGCGCCGGCGCCCGACACGGGCGGGCCCTACAAGTGCGAGATGTGCTCGGAGGTGTTCCCGCGACGCGATGCCTTGTTGCTGCACGTGCCGGTGCACATATGA
- Protein Sequence
- MEGEEFNLQWEEVEVKAPGDIIEENDQMAAENLMYLAQDVVSYAETAELDPNVECVTEEVITDDWVIPGGQERVEVSLDQFTNPVSDVKEENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLINHLKVHAFVPDNEDAMDYEELLDNQVTKPKKKRGRRKKNPEPVENGMWENMTSARTQQWSRRARSPAKAPPTPPPPPSPPSPPSPPPTPSDPSRPFVCRHCGIGFAREKALQSHARVHGGDSPVECGECGELCWSREALANHAAHRHPHLPPRAGHPPAPYQGEDEDDDMDYRLSPVPHGGNERMYESVRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSTSSAWGEHTCDVCGESCTDALQLLAHAEGHAERHHATPSCSRTPRDTPSDTTPLPGNTRTHTHTWDVCGENCTDALQLLAHSEGHAERHHATPSCSRTPRGTPSDTTPLPGNTRTHTHTHTCDVCGESCTDALQLLAHSEGHAERHHATPRLKKTSRGRNNVSSSSSSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGECTGMLELMGSLQAKCSGRVALNRSTSGFTRASGRTRVDSVGRRSRTEARCEDVTPVDREKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCAVCGRTLHSSPDLVQHLIQHCDANTALKRQPQTGPRKYKRRRKMKTEEVSPSRQSWERERGSASPAASRTPSPRSRSATPPRAATPPTPSPPPPRRRKRRAPPPAPRPKMIHTEDPRPRTKQVRQRRPPRHPADDLRAIRPRSPSPPLPARRAAVAVTPSPSPPPAPSPSPSPSPPPPAPAPDTGGPYKCEMCSEVFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -