Pnig002859.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrausta nigrata
Gene Symbol
L
Assembly
GCA_949316185.1
Location
OX438937.1:11860190-11868680[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.5 1.3e+02 4.2 4.8 1 23 3 25 3 25 0.97
2 16 6.4e-07 5.8e-05 24.2 2.7 1 23 31 53 31 53 0.99
3 16 2.1e-05 0.0019 19.5 0.1 1 23 59 81 59 81 0.98
4 16 0.00067 0.061 14.8 0.0 2 23 97 119 96 119 0.95
5 16 6.1 5.5e+02 2.3 0.1 9 23 150 165 146 165 0.93
6 16 0.39 35 6.1 0.1 3 23 218 238 217 238 0.97
7 16 0.58 52 5.5 0.0 2 20 252 270 251 271 0.86
8 16 0.0003 0.028 15.8 0.6 1 23 281 304 281 304 0.94
9 16 0.033 3 9.4 0.1 1 23 309 332 309 332 0.92
10 16 0.00083 0.075 14.5 0.3 1 23 390 414 390 415 0.96
11 16 0.0002 0.018 16.4 0.1 2 23 470 491 469 491 0.96
12 16 0.059 5.3 8.6 0.0 1 23 499 521 499 521 0.98
13 16 1.9 1.7e+02 3.9 0.7 2 23 529 550 528 551 0.93
14 16 0.89 80 4.9 0.3 1 23 625 647 625 647 0.94
15 16 0.0035 0.32 12.5 0.1 1 20 655 674 655 677 0.95
16 16 0.13 12 7.5 0.4 1 23 684 706 684 706 0.94

Sequence Information

Coding Sequence
ATGCCGTTCCGCTGCGAGTTCTGCGCGCGGCTGTTCAAGCACAAGCGCTCGCGTGACAGGCACGTCAAGCTGCACACTGGCGATAGGAAGTACCGCTGTGCGCACTGCCCTGCCGCCTTCTCCAGGAGCGACCACCTTAAAATCCACATGAAGACGCATGACAACCAGAAGCCGTTCCAGTGCAACGTGTGCAACCGCGGGTACAACACGGCCGCGGCGCTGACGTCGCACATGCAGGGCCACAAGCGCGACCGCGAGGGCCACGAGCCCGACCGCCGCCGCGCGCTGCGCTGCCTCCGTTGCGGAGACGCCTTCAGGAGACCAGACCTTCTGCagGCACACATGGCGAGTGCCCATGGAGTCGAATCTGCAGCGATGACTCCACCACGAAGGGTTGCCTCCCAACCTCCCCCTACATTACTCGCCTGCATATACTGCACTCGCGATACATTCACAAGCATGGAACAATTGCAACTCCATGTCCGTGCTGCTCACTCCGCTTTGCTGAACGAAGAGACACCAGTGCAATCCGTCGATCAGCCTGCCCCAACGGATCTCAGCCGGAGAGCGCCTGATGATGTACCCCCTGTGAAACGACCACGGTCTGGGTCTGGAACTCCAAAGACCGCTTTGTCACCGAGTACTCTCCTTTGCAACCAATGCGATGCAGCGTTGCCTGACTTTGAAGCTTTTAGAACGCATCTGAAAGGGCACCTCGAGGAAGGAGGCGAACTCGGACGCTCCAGTCCGTCGCCTTGTCTGCACTGTGGAGCCACGTTTGCGGATGCAGCTGCTTCGGAGCGACACCTCGCTGCATATTATCTCTCCGTCTCCTGCGAGTATACATGTCACAGCTGCGCTCGAAGTTTTTCCGCTCCGGACGATCTTCAAAAGCACCTTCTCGATTTGCACGCGCATCACTTGTACCGATGTTCGCTGTGCAAAGAGATATTCGATTCCAAGGTTGCAATTCAGGTGCACTTCGCAGTAGCGCACAGTGGCGAGAACAAGGTGTGGATGTGCAGGTCTTGCGGCGGCAACGCTGGGCCCATCCGCACGGAGGCGGAGGGCGCGGCCCACGTGCGCACGCGTCACGCGGCCGCGCGGTGCGCGTGCGGCGCCGTGCTGGGCGGGGCGGGTGCGCGAATGCCGAGGCCGCACCGCGCGTACCGGTGTCCTGCACCCACGTGCAACGACACCTTCGCCGTACAGTACTTGCTGGAACGGCATATGCAGGCGCACCATGCTTCGCCACATCAGGCCATAAACGGTGATCTCTCACGAGTGAAACGTCAGGACAACAACAACGCGGACGCAGACGGCACCTGCTCGCCGTGCACCACGCTAGCGGACGGCACCGGCACCGCGCCGGAGGAGCGTCGGCGCAAGAACGGCGCGGTGGCGCTGCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAGCTCGAGGCGCACACGCGCGCGCACTCCGGCGCCGCCGCCGCGAGGCACAAGTGCCTCATCTGTGATGAGGTGCTGCCCTCTGCTGCTGTGCTGGCGGAACACAAGCTGACTCATTGCAAGGTAGTGGCTGGTGATACTTGCGCAAGATGCCGTGCTCGGCTGCCGTCCGAAGAATCCTTCCTATCGCACATGGCGCGGCATCACCCGACACTCCCCGCCCCGTGCGTAGTGTGCCGGCAAACCCTGGCATCCGAGGCCGAGGCGCGCCTCCACGCTCGCTTCCACTTACGTCCGGCTGAGGACGAACAGAGATGTGCGATATGTCTTCGAGCACTGACGGAATCAGAGGCCGGGGAAGGAGCTCGAGCGTGTACAGCTTGTTACGCCCGTCATGCCAATCCAAGACCGCCGCCTCCAGCTGATCACGATTGCAGACTTTGTCGTCGAGCCCTCGGATCTCCTACACGTCTACAAGCTCATCTGATTGAGCACACTTTCGCAGGCATAAGTGCATTCACTTGCTACCTATGCTCGGCCGTGTTTACCAGCGCTGCCGGCTTACAGCGACATCTTCCCGAACATGCTTCTGCGCCCAAGCCATTCGATTGTGGCCGGTGCGGGCTTAAGTTTTTCTTCCGTGCTGAGCTGGACAACCATGCGTTCGTGCATTTAGAAGAAGCTGAGATAGCTCAGAGGGCATTTTATGAGGCTTATGCGAGAGGAGCCGCGTCCGCGTGGGCCGCTTTGGCTCCGCCAGAGACGGTTCAACCGCCGCAAATGTCGGCAGCTGCGCCATCTCTGCCTGAAGTTAAGCGAGAGCTAGAGATAAAGGAGGAGCGGAATACAGACGAGTACATCGAGGTGTCGTCTCCCCCGCCGCCCCCTGCCCCCTCTCCCCCGCCCGTCGTGAAACAGGAGAAGCCCGATGAAGACTGA
Protein Sequence
MPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCPAAFSRSDHLKIHMKTHDNQKPFQCNVCNRGYNTAAALTSHMQGHKRDREGHEPDRRRALRCLRCGDAFRRPDLLQAHMASAHGVESAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNEETPVQSVDQPAPTDLSRRAPDDVPPVKRPRSGSGTPKTALSPSTLLCNQCDAALPDFEAFRTHLKGHLEEGGELGRSSPSPCLHCGATFADAAASERHLAAYYLSVSCEYTCHSCARSFSAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWMCRSCGGNAGPIRTEAEGAAHVRTRHAAARCACGAVLGGAGARMPRPHRAYRCPAPTCNDTFAVQYLLERHMQAHHASPHQAINGDLSRVKRQDNNNADADGTCSPCTTLADGTGTAPEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLSHMARHHPTLPAPCVVCRQTLASEAEARLHARFHLRPAEDEQRCAICLRALTESEAGEGARACTACYARHANPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGISAFTCYLCSAVFTSAAGLQRHLPEHASAPKPFDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPETVQPPQMSAAAPSLPEVKRELEIKEERNTDEYIEVSSPPPPPAPSPPPVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00365139;
80% Identity
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