Pnig030208.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrausta nigrata
Gene Symbol
-
Assembly
GCA_949316185.1
Location
OX438963.1:3293485-3301204[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 2 1.8e+02 3.8 0.0 1 21 66 86 66 89 0.88
2 24 0.00039 0.036 15.5 0.4 1 23 117 140 117 140 0.96
3 24 0.039 3.5 9.2 0.7 1 23 161 183 161 183 0.96
4 24 0.00012 0.011 17.1 0.1 1 23 187 209 187 209 0.98
5 24 0.0012 0.11 13.9 2.2 1 23 214 237 214 237 0.93
6 24 0.043 3.9 9.1 0.3 2 22 244 264 243 266 0.89
7 24 0.35 31 6.2 0.2 1 23 332 355 332 355 0.92
8 24 0.074 6.7 8.3 0.2 1 23 383 406 383 406 0.95
9 24 0.039 3.5 9.2 0.7 1 23 427 449 427 449 0.96
10 24 0.035 3.2 9.4 1.1 1 23 453 475 453 475 0.96
11 24 0.0011 0.1 14.0 1.7 1 23 480 503 480 503 0.93
12 24 0.16 15 7.3 1.0 2 21 510 529 509 532 0.87
13 24 6e-06 0.00055 21.2 2.1 1 23 539 562 539 562 0.98
14 24 2.5 2.3e+02 3.5 1.0 1 20 568 587 568 588 0.81
15 24 1.5e-07 1.4e-05 26.2 1.3 1 23 596 618 596 618 0.99
16 24 0.00028 0.025 16.0 5.7 1 23 624 646 624 647 0.95
17 24 0.28 25 6.5 0.1 1 22 732 753 732 755 0.89
18 24 0.00017 0.015 16.7 2.5 1 23 827 849 827 849 0.98
19 24 0.042 3.8 9.1 0.0 1 23 853 875 853 875 0.96
20 24 0.00063 0.057 14.8 0.1 1 23 880 903 880 903 0.95
21 24 0.045 4.1 9.0 1.3 2 23 910 932 910 932 0.92
22 24 3.6e-06 0.00033 21.9 1.4 1 23 939 962 939 962 0.98
23 24 9.4e-07 8.5e-05 23.7 2.2 1 23 996 1018 996 1018 0.98
24 24 8e-05 0.0072 17.7 4.2 1 23 1024 1046 1024 1047 0.95

Sequence Information

Coding Sequence
ATGGTTTGCCACTCTGATGCAAAGAACTTTGAGTGCCAAGTCTGTGATGATGCAAGTGCGAAGGTTTCTAAAGACCGTTCCAGAAAAATAGAAGCTCGGAACAATACTGATATAGACCAGAAGAGGGTCAAAAGGGACAGCGTCATCGCGCTTATACGCagcacaaacatatgccccttcAGACATTCCAGATTCTTCATGTGTCTTTACTGTCCCAATGAGTACGTAAACATGCCAGATTTGGTACAGCACGTTGGTCTCGAGCATAAAAACGTATCGGATTACGACATCAAAAAAGCtgttgttaaaacattttggtgTGAGCCGGTCAAAGTGAACGTCATGGATTTTAAATGCAAGCTTTGCGGCATTGAAAGTGTGAGTTTTGATAATCTTAAACGGCATCTCATCGTTAAACATGAAAAGAAAATCGATTTTGACAATGACGGGGTTTTGCCTTTCAATATAACGGCGGATGAATTCATTTGTGTGCTGTGCGGGTTGAAGTTGGAGCAATACCAGCTTCTGTGTAGGCATATAAATGAACATTACAAGAAATTCGTATGTCCTAAATGCGGAGCTACGTTCGCTTCTGACGGGCGTTTGCGGAGGCATTTGAGTTCGCACGATGATGGGGTTCATCCGTGTGAGCAGTGCGGCAAAGTCTTCAGAAATGTCCATGCAAAAAAACGTCACATCACACAGGTACACTTAAAGGCTAAAAGAAACAAATGCACGCTCTGCGATGAGAGCTTCAGGGAATACGGAGAGAAGCAAAAACATTTAGTGGCCGTCCACGGAATAAAGCCGCGCGAGTTCAGATGTGGATTTTGTTCTAAAGTGTACGGTGAAGCAAGCGTGAAGGTTTCTAGAAACCTTTCCATCAAAATAGAAGCCGAAAACGACACGGATCTAGAGAAGAGGGTCAATAGGGACAGCATTGTTGCGCTTCTACGCAGTACAAACATATGTCCCTTCAAATATGCCAGACTTTTCAAGTGCCTTTACTGTCCTAACAATTACGTTAATATGCCGGATTTGGTAAATCACGTTGATCTCAAGCATAAAAACGTAACGGAATACGACATCAGTAAAGTCATCGTTAGGATTGGTCGGTGTGAGCCGATCAAAGTCAACGTCTTGGATTTCAATTGCAGGCTTTGCGACGTTGAAAGTGCTAGCTTTGAAGATCTCAAACGGCATCTCATCGTTAAACATGAAAAGAAAATCGATTTTGACAATGACGGGGTTTTACCTTTCAAGATAACGGCGAATGAATTCATTTGTGTGCTGTGCGGGTTGAAGTTGGAGCAATACCAGCTTCTGTGTAGGCATATAAATGAACATTACAAGAAATTCGTATGTCCTAAGTGCGGAGCTACGTTCGCTTGTGACAGGCGTCTGCGGAGGCATTTGAGTATACATGATGATGGAGTTCATCCGTGTGAGCAGTGTGGCAAAGTTTTCAGTAAGGTACATTCGAAACAGCGCCACATCATACTGGTACACTTGAAGGCTAAGAGGAACAAATGTACTCACTGCGAAGAGAGCTTCAGGGAATACCAGCAGAAACAAGTACACTTAGTAGCCGTCCACGGAGTGGAGCCGCGGAAGTACAAATGTAGTTTTTGCTCTAAAGCGTTCAATAGAAGTTCGACGCTACGATTACATGAGCGCACGATTCATGTACAGGCACAATCATATATATGCAACGTTTGCAATTACAAGTGTTTTAGTAAGAATATATTGTCGGAGCACATGGTGTGTCATACGGGCGAAAAGAAGTTTAAGTGTCAGGTGTGCGGAAAGTCTTACGCTCGCAAGAAGACCCTGACCGAGCACATGAGGATACACAACAACGACAGGCGGTTCGCATGCCAGCACTGTGACAGAGCGTTTGTACAAAAGTGTAGCTTGAATGGGCACATCAAAACTCATCATAAAGAATTTCAGGCTGTACCTGTACTGTACTTGGGTTATTGGGTCACCGACGACCTCAAGAATAGCATGGATATTGACAGAATGAATATTGATAGCATAAgtGACGCAAGCGCTGATGTCCGTCCCTTGAAAATATTGGATGCCGGAAACTCCGATCACATATTGAATGTAGAACAGAAGAGAATTGGTAGAGAGAGCGCTATCGCGCTTATACACAGCACGAACGTATGCCCATTTAGATTCAACAGATTTTTCATATGTCTTTACTGCCAAAGCCGATACGTGAATATGTCAGAATTGGCACAACACGTTGGGCTCCAACATAAGCACCCTACGGAGAAAGATATCAGAAAAGCCGTTGCCACTTTAGGCCGCATCGAGCTGATCAAAATCAACGTATTAGACTACGGCTGCAGAGTTTGCAACGACGACATTTGCAATTTTGAAGACCTCAAACACCATTTAGTTGGAAAACACAAAAAGCAAATCGATATTGACAATGATGGAGTTTTGCCTTACAAGATCACGGAGACCGAATTTACTTGTGTACACTGTGGAATAAATTTTGAGCAATACCGATATCTGACCAGGCATATAAACCAGCACTATACGAAGTTTATATGCGATCAGTGTGGAGCTATGTTCGCTTCGGACATACGTTTACGAACACACGTCGCTTCTCACGATGTGGGGTCTTATCCGTGTGAAGAATGCGGCAAAGTATTTACTAACTTTGCGGTGAAACAGATACATCTTAAATCGGTGCACTTTAAAGCTAAAAGAAACAGGTGCATGTTTTGTTCGGAGACCTTCAGAGACTACTACAGTAAACAGAAACACATGACAGCAGCTCACGGGATGGGGCAAAAGCAGTACAAATGCGGTTTTTGTCCGAAGTTGTTCAGCACCAGCTCGAATCTTCGAGCTCACGAGCGCAAGACCCACATAAAGACGCAGACTTATGCGTGTGATGTGTGCGACTACAAGGCTTTCTGCAAAGATTTTTTGTCAAAGCATATGATTTGCCACTCTGAAGAAAAGAACTTTGAATGCCAAGTCTGTAAGAAATCTTACTCAAGAAAGAAGACTCTGACTGAGCATATGAGGATACACAATAATGACAGGCGATTCGCATGCCAGTACTGTGATAGGGCGTTTGTGCAAAAGTGCAGTTTGAAAGGGCACATAAAAACACACCATAAGGAATTTCAGATGTGA
Protein Sequence
MVCHSDAKNFECQVCDDASAKVSKDRSRKIEARNNTDIDQKRVKRDSVIALIRSTNICPFRHSRFFMCLYCPNEYVNMPDLVQHVGLEHKNVSDYDIKKAVVKTFWCEPVKVNVMDFKCKLCGIESVSFDNLKRHLIVKHEKKIDFDNDGVLPFNITADEFICVLCGLKLEQYQLLCRHINEHYKKFVCPKCGATFASDGRLRRHLSSHDDGVHPCEQCGKVFRNVHAKKRHITQVHLKAKRNKCTLCDESFREYGEKQKHLVAVHGIKPREFRCGFCSKVYGEASVKVSRNLSIKIEAENDTDLEKRVNRDSIVALLRSTNICPFKYARLFKCLYCPNNYVNMPDLVNHVDLKHKNVTEYDISKVIVRIGRCEPIKVNVLDFNCRLCDVESASFEDLKRHLIVKHEKKIDFDNDGVLPFKITANEFICVLCGLKLEQYQLLCRHINEHYKKFVCPKCGATFACDRRLRRHLSIHDDGVHPCEQCGKVFSKVHSKQRHIILVHLKAKRNKCTHCEESFREYQQKQVHLVAVHGVEPRKYKCSFCSKAFNRSSTLRLHERTIHVQAQSYICNVCNYKCFSKNILSEHMVCHTGEKKFKCQVCGKSYARKKTLTEHMRIHNNDRRFACQHCDRAFVQKCSLNGHIKTHHKEFQAVPVLYLGYWVTDDLKNSMDIDRMNIDSISDASADVRPLKILDAGNSDHILNVEQKRIGRESAIALIHSTNVCPFRFNRFFICLYCQSRYVNMSELAQHVGLQHKHPTEKDIRKAVATLGRIELIKINVLDYGCRVCNDDICNFEDLKHHLVGKHKKQIDIDNDGVLPYKITETEFTCVHCGINFEQYRYLTRHINQHYTKFICDQCGAMFASDIRLRTHVASHDVGSYPCEECGKVFTNFAVKQIHLKSVHFKAKRNRCMFCSETFRDYYSKQKHMTAAHGMGQKQYKCGFCPKLFSTSSNLRAHERKTHIKTQTYACDVCDYKAFCKDFLSKHMICHSEEKNFECQVCKKSYSRKKTLTEHMRIHNNDRRFACQYCDRAFVQKCSLKGHIKTHHKEFQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-