Basic Information

Insect: Pyrausta nigrata
Gene Symbol: -
Assembly: GCA_949316185.1
Location: OX438963.1:3311002-3317211[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.037 3.3 9.3 0.9 1 21 64 84 64 85 0.96

2 29 0.84 76 5.0 0.5 3 23 114 134 113 134 0.92

3 29 0.038 3.5 9.2 0.5 2 23 157 178 156 178 0.97

4 29 0.00087 0.078 14.4 0.4 1 23 182 204 182 204 0.94

5 29 0.043 3.9 9.1 0.1 1 23 209 232 209 232 0.85

6 29 0.64 58 5.4 0.3 3 23 240 261 238 261 0.94

7 29 0.012 1.1 10.8 1.9 1 23 268 291 268 291 0.96

8 29 7.3e-06 0.00066 20.9 0.4 3 23 300 320 298 320 0.97

9 29 1.2e-06 0.0001 23.5 2.4 1 23 326 348 326 348 0.98

10 29 0.02 1.8 10.1 0.4 1 23 425 448 425 448 0.97

11 29 0.069 6.3 8.4 0.8 1 23 474 497 474 497 0.97

12 29 0.99 89 4.8 0.1 2 23 548 569 547 569 0.93

13 29 0.0015 0.14 13.6 0.4 1 23 638 660 638 660 0.98

14 29 4.4e-05 0.0039 18.5 4.0 1 23 664 686 664 686 0.98

15 29 0.00049 0.044 15.2 0.2 1 23 691 714 691 714 0.96

16 29 0.043 3.9 9.1 3.1 1 23 720 743 720 743 0.96

17 29 0.67 61 5.3 0.0 1 23 799 821 799 821 0.94

18 29 1.5 1.3e+02 4.2 0.2 2 23 845 867 844 867 0.94

19 29 0.019 1.7 10.2 2.6 1 23 889 911 889 911 0.98

20 29 3.1 2.8e+02 3.2 1.2 1 23 994 1017 994 1017 0.92

21 29 3 2.7e+02 3.3 0.3 2 23 1040 1062 1039 1062 0.91

22 29 0.017 1.5 10.4 4.7 1 23 1084 1106 1084 1106 0.97

23 29 0.00046 0.041 15.3 1.6 1 23 1110 1132 1110 1132 0.98

24 29 0.045 4.1 9.0 0.1 1 23 1137 1160 1137 1160 0.95

25 29 0.00015 0.014 16.8 2.5 1 23 1166 1189 1166 1189 0.98

26 29 0.13 11 7.6 1.1 1 23 1196 1219 1196 1219 0.95

27 29 0.0013 0.12 13.8 3.4 1 23 1225 1247 1225 1247 0.96

28 29 1.8e-06 0.00017 22.8 1.0 1 23 1253 1275 1253 1275 0.99

29 29 1.3e-05 0.0012 20.1 4.1 1 23 1281 1303 1281 1304 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.037	3.3	9.3	0.9	1	21	64	84	64	85	0.96
2	29	0.84	76	5.0	0.5	3	23	114	134	113	134	0.92
3	29	0.038	3.5	9.2	0.5	2	23	157	178	156	178	0.97
4	29	0.00087	0.078	14.4	0.4	1	23	182	204	182	204	0.94
5	29	0.043	3.9	9.1	0.1	1	23	209	232	209	232	0.85
6	29	0.64	58	5.4	0.3	3	23	240	261	238	261	0.94
7	29	0.012	1.1	10.8	1.9	1	23	268	291	268	291	0.96
8	29	7.3e-06	0.00066	20.9	0.4	3	23	300	320	298	320	0.97
9	29	1.2e-06	0.0001	23.5	2.4	1	23	326	348	326	348	0.98
10	29	0.02	1.8	10.1	0.4	1	23	425	448	425	448	0.97
11	29	0.069	6.3	8.4	0.8	1	23	474	497	474	497	0.97
12	29	0.99	89	4.8	0.1	2	23	548	569	547	569	0.93
13	29	0.0015	0.14	13.6	0.4	1	23	638	660	638	660	0.98
14	29	4.4e-05	0.0039	18.5	4.0	1	23	664	686	664	686	0.98
15	29	0.00049	0.044	15.2	0.2	1	23	691	714	691	714	0.96
16	29	0.043	3.9	9.1	3.1	1	23	720	743	720	743	0.96
17	29	0.67	61	5.3	0.0	1	23	799	821	799	821	0.94
18	29	1.5	1.3e+02	4.2	0.2	2	23	845	867	844	867	0.94
19	29	0.019	1.7	10.2	2.6	1	23	889	911	889	911	0.98
20	29	3.1	2.8e+02	3.2	1.2	1	23	994	1017	994	1017	0.92
21	29	3	2.7e+02	3.3	0.3	2	23	1040	1062	1039	1062	0.91
22	29	0.017	1.5	10.4	4.7	1	23	1084	1106	1084	1106	0.97
23	29	0.00046	0.041	15.3	1.6	1	23	1110	1132	1110	1132	0.98
24	29	0.045	4.1	9.0	0.1	1	23	1137	1160	1137	1160	0.95
25	29	0.00015	0.014	16.8	2.5	1	23	1166	1189	1166	1189	0.98
26	29	0.13	11	7.6	1.1	1	23	1196	1219	1196	1219	0.95
27	29	0.0013	0.12	13.8	3.4	1	23	1225	1247	1225	1247	0.96
28	29	1.8e-06	0.00017	22.8	1.0	1	23	1253	1275	1253	1275	0.99
29	29	1.3e-05	0.0012	20.1	4.1	1	23	1281	1303	1281	1304	0.96

Sequence Information

Coding Sequence: ATGCCCGGACAAACTGTGATAAAAGTAGAGAAAAAGGAAAATATACCAAACCAATTAGAAAATAGTGCCCCCCACAAACGGCGCTACCGAAGGAGCGCCAGAGCCGAAGCTCGCATCATTATAAAGAAGAATGCCACCGCGATTCTCGAGTGCTGGTCCGCTTGTCCGTTCAGATGGAAACAAAACAGATTCAAGTGTGCTTACTGTGAAGCTAACTTCACCGAGTGCAACTCGCTCAGAGAGCACGTGAGACTGTGTGCGTCCAGGCATACCGTCAAGGATATCTACAGTAAATTCAAGGAGATGCCTCTCATTAATATCGATATCGTCGAAGCTTGCTGTAGTATTTGTTCCGCACCGTTCACAGACGTCAAACAGGTACGGGAGCATGTTGTTCAACATGGTTACATGTTCGACTTTAATCACCCAGACGGAGTCTTACCATTTGCTCTTGATAAAGAGTCGTGGACATGTGTGATATGCAAGGAGAAGTTCAACTACTTCCTTAAACTATATGAACACATGAATGTGCACTATCAGCACTACATTTGCGCCACTTGCGGCAAAAGCTTTATGACGGCGACAAGGTTGAGAAAGCATTCCGACATTCACACTTCGGGATCATTTCCGTGCAACGAATGCGGACGGATATTCACCATGCGGGCGGCTAGGGATTCTCACAAAGCTCGTGCTCATGCTAAGGGCCCTCGTTATGGTTGTCCTCATTGCAGTCTCCGATTCGAGGGGTACTACGAGAGGATGGCCCACTTAAACGAAGCGCACCGAGAGAAGAAAGTGCTGTACAGCTGCTCGCACTGCGAGTTGAGTTTCAAAACCAGCGGGAAAAGAGCGATGCACGTAAAATCGGTGCATTTCCCCCCTCAAAGGGATTATGGGTGTCCTTATTGCGAGTGGCAGTTCAAAACGAGCTATGAATTAAAAAGGCATATGGTCAGACATACTGGAGAAAAGAATTTCCATTGTAACGTTTGCGGGAAGTCATTTCCGAGGAATAGAGCTTTAACTACTCATCTGAAAACACACGAAGAATTTGGTTgttCTGCTAGTTCGTATTCGGATTCGGTTTCAACGGTAAAATCCTGTAGGAAGTTAAAAGAAAAGGTCAGTGAACGACAGATGCGCAGGCGACGCCGAGCCATCGAGCTCCCTGAGGAATCGGAAAGACGCATCGCGAAAACAATGATGAGGCGAAATGCTATGGCGATTCTACAGTTTTCGACTGCGTGGGCCTTTAGATGGTTCCATGGCGTTTTCTATTGCTCGTACTGCGAATCTAAGTTCGCTGACATCGAACCCCTGAAGAAACACGTCATAACATTCCACTCGAACGAACCCCCTACTAAACGAGTATTCGCCAAGATCACTGAAAATAACATGCTTAAAATTGACATAGGAAACTTTTCCTGCAGACTGTGTAATAGATATTTGGAAAGTATAGACgagttgaaaacccacttgcTAACATTTCATGAGAAAGgACCAGAAGGCACTGAACAGAAGAAATCACAAGTCAAGGTTAAGTGGAAACGAAGACGCAGAGTCGATGAGGACAAAGCCAACGCTGCATTGATCTTGCAGTATTCAAACGCTGTGCCATTTAGATGTCAACGTGGAAAACTCATGTGCGCCTATTGTCCAACTAACTGCCCTGACATGATACAGCTGAGAATACATTCTGCGATCCATAATAAACTAGACGTTCTAGAAAATCCTAATGTCCGAACCTCATTTCCTTTAAGAATTGACATCACAGGTCTAGCTTGCACTATATGCAATGAAAACCCACTGACGTTAAAAGATCTAAAAAGCCACTGGAATACTGTTCACGCTAAAACCATCAATCAGCATTATAGCGACGGAGTCATCCCGTTTGTTTTAACTGGAAAAGAATACAAATGCGTGCTTTGTGGGGTAATGTTTGAAAGATTTCTATCTCTGTTCGTGCACATGAACAATCATTTTCAAAGCTACGTGTGTCATACTTGTGGCAAAGGGTTTTCGGGAAAACACAAGTTGCGAGCTCACCAGACAAGTCACGAATCTGGACAATTTGCATGTCCTAAATGTAATTTGGTTTTTATTAATCGTGCTACCAAAAATAGGCACATGTCTGTCGGGCATGGTCCTAAAGAGAGATATCGTTGTCCTATGTGTGATGTCCATTTTGAATCATACCATTCTCGCTTAAGGCACTTAGATCGGATTCACGGCGAAAAAGTAGAATATCGGTGTAACTTGTGCCCTGCCATATTTGgCTCCGTCGACGTCAATCTAAAATGGAAACCACGACGCAAGTTTAACGATCACAGAGACAATGCAGCTATAATCATTGAGTGTTCGAACGCGTGTCCTTTTAGATGGAAGCGAGGGGCATTTATCTGCGCTTTCTGTCCTCTTTCGTTCGGAAACCTTGCTGGTGTCAAGGAGCACACCATAGAACATCCTAATAGAATAGAAGTACTGCGTTTCGCCAGACAGTCGGACAACATCAAAGTTGATGCTACAGCACTTAGATGCGAGCTTTGTCTCCAAGAAATGAAAGACATTGACACCCTTAAAGATCACTTGCGCGTTTCCCATAACAAACCGATAAAACAGGGCATCGATTCAGGTGTAACACCCTTCATTACTGACGGAAAAGAATACGTCTGCACGCACTGCGACCAAAGATTTGAATTGTTCTCGAAAATTAATACACACATCAATCAACATTATCCAAATAACATTTGTTTTGAATGCGgaAAATCTGGACTTGTGCAAATCGCCGATGAAGGCAGAGAGATTTGCACCGTGCAGGCTGACACGCAGAATATCTCTGTGAAAACAGAGAAGATTGCTGCTGCATTGTTTGCCTCACCTCGAGATATGGGCGATGAGAAACGCACTttgttcagaaaaaatataagcaTTATAATAGAATCGTCTACAGCGTACCCTTTTAAATATAGGAAAGGAATCTACATGTGTTACTACTGCAAAAACACTTTCTTGGAACCAGAAAAACTACGGGAACACAACAAAAACGAGCATGCAGACGTTCAGATAACAGTTAAACCGAGAAAATATGAACCGTTGAAAATGGACTTTACTTTGACGACTTGCAAGTTATGCGGGGTCGATATACTCGATTACACTAATCTGAAATTGCACTTGAAATCTGAACACAATAAACCTATCGACTGCACTTATGGGGAAAGTGTACTGCCTTACAAGTTGAGCAAAGACGAATACTGCTGTCAGATATGTGGAAAGAGATACGAGATGTTTCTGAGTCTGCACCGGCACATGAACGAACACTACGGCCAATATATTTGTGAGAATTGCGGAAAGAATTTTGTGACATTACACAGAATGATGAATCATGCTCGAACTCACGAGCGCGGCGCTTTCCCTTGCAGACTGTGTAAGGAGACGTTTCCATCCTATGCCTCCATGTACGCTCACGTCGCCAAAGTCCACAAATCCAACAAGCGGTACAAATGTCCCATTTGCGACGAAAAATTTTCGTCATACAAACACCGCGTGAAACATTTGAGTACGGTCCACGGGGAGAAGACTGCCGTTTTCCCTTGTGCGCTGTGCCCTAAAGTGTTTGACCTGTGCAGTCGCAGGACGGCACATATAAGGTTCCAGCATCTCCAGGAACGCAACCACGTCTGCCACGAATGTGGCATGAAATTCTTCTCGAACTATGAGCTGCAGGAGCATTCGATAAAACACAACGGTGAAAGGATATACCAGTGTGACGTGTGTAAAAAATCTTACGCTAGGCTGAAGACTCTGCGAGAGCACATGAGAATTCATAACGATGATAGGCGATTTGTCTGTTTTGTATGTGGACAGTCATTCATACAGAACTGTAGCCTGAAGCAGCACATGAGAGTTCATCATCCTATCCTACATAAAGAGTGA
Protein Sequence: MPGQTVIKVEKKENIPNQLENSAPHKRRYRRSARAEARIIIKKNATAILECWSACPFRWKQNRFKCAYCEANFTECNSLREHVRLCASRHTVKDIYSKFKEMPLINIDIVEACCSICSAPFTDVKQVREHVVQHGYMFDFNHPDGVLPFALDKESWTCVICKEKFNYFLKLYEHMNVHYQHYICATCGKSFMTATRLRKHSDIHTSGSFPCNECGRIFTMRAARDSHKARAHAKGPRYGCPHCSLRFEGYYERMAHLNEAHREKKVLYSCSHCELSFKTSGKRAMHVKSVHFPPQRDYGCPYCEWQFKTSYELKRHMVRHTGEKNFHCNVCGKSFPRNRALTTHLKTHEEFGCSASSYSDSVSTVKSCRKLKEKVSERQMRRRRRAIELPEESERRIAKTMMRRNAMAILQFSTAWAFRWFHGVFYCSYCESKFADIEPLKKHVITFHSNEPPTKRVFAKITENNMLKIDIGNFSCRLCNRYLESIDELKTHLLTFHEKGPEGTEQKKSQVKVKWKRRRRVDEDKANAALILQYSNAVPFRCQRGKLMCAYCPTNCPDMIQLRIHSAIHNKLDVLENPNVRTSFPLRIDITGLACTICNENPLTLKDLKSHWNTVHAKTINQHYSDGVIPFVLTGKEYKCVLCGVMFERFLSLFVHMNNHFQSYVCHTCGKGFSGKHKLRAHQTSHESGQFACPKCNLVFINRATKNRHMSVGHGPKERYRCPMCDVHFESYHSRLRHLDRIHGEKVEYRCNLCPAIFGSVDVNLKWKPRRKFNDHRDNAAIIIECSNACPFRWKRGAFICAFCPLSFGNLAGVKEHTIEHPNRIEVLRFARQSDNIKVDATALRCELCLQEMKDIDTLKDHLRVSHNKPIKQGIDSGVTPFITDGKEYVCTHCDQRFELFSKINTHINQHYPNNICFECGKSGLVQIADEGREICTVQADTQNISVKTEKIAAALFASPRDMGDEKRTLFRKNISIIIESSTAYPFKYRKGIYMCYYCKNTFLEPEKLREHNKNEHADVQITVKPRKYEPLKMDFTLTTCKLCGVDILDYTNLKLHLKSEHNKPIDCTYGESVLPYKLSKDEYCCQICGKRYEMFLSLHRHMNEHYGQYICENCGKNFVTLHRMMNHARTHERGAFPCRLCKETFPSYASMYAHVAKVHKSNKRYKCPICDEKFSSYKHRVKHLSTVHGEKTAVFPCALCPKVFDLCSRRTAHIRFQHLQERNHVCHECGMKFFSNYELQEHSIKHNGERIYQCDVCKKSYARLKTLREHMRIHNDDRRFVCFVCGQSFIQNCSLKQHMRVHHPILHKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -