Pnig002850.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438937.1:11712852-11713430[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-08 4.7e-05 24.0 0.1 5 41 1 36 1 39 0.85
Sequence Information
- Coding Sequence
- ATGCTTAAGGCTCTTCAATTACATAGATCAGGTGAAAGTATTAGAAAAGCAGCgaaattttttaatattgcgTACCCAACTTTACGACGCTACGTAGCACAAAACTTGCACGTCAATGTAGAGGACCTTGCTGAGAAGAGATTgctaccgaattatgagaatcaTCTCGTTTTTACCGCTGAACAAGAAGAAGTTTATAAAGAGTATGTAAAGGAGTGCGCTCTGAAGTTTTATGGACTGACGCCAAAAGACTGCCGCAAAGTGGCGTACCAAATGGCGAAAGTAAATAACTTGACAATCCCAGAGAGTTGGGAGCGAGATAAAATGGCAGGAAAAGAATGGTTTAGGCCATTTAGGAAACGCCACCTTGATCTCTCAATAAAGAAGCCTGAAGCTTGCAACTTAGCTCGCGCGACAGCATTTAACCGGGAGACGGTCAAATCATTCTTTGATAATTTGAAGACAGCAATGGGTCGTCATTCATCTTTCAGCACTGGTTGCCGTAACAGCAACAACAACTGTCCAGCGTCCTCAAAAAGTTGTTGGACCTGGAAAGCACAATATTGCAAAGGTCACTAG
- Protein Sequence
- MLKALQLHRSGESIRKAAKFFNIAYPTLRRYVAQNLHVNVEDLAEKRLLPNYENHLVFTAEQEEVYKEYVKECALKFYGLTPKDCRKVAYQMAKVNNLTIPESWERDKMAGKEWFRPFRKRHLDLSIKKPEACNLARATAFNRETVKSFFDNLKTAMGRHSSFSTGCRNSNNNCPASSKSCWTWKAQYCKGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744564;
- 90% Identity
- -
- 80% Identity
- -