Pnig023410.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438955.1:3525160-3526845[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-09 1.1e-06 29.2 0.2 1 44 15 56 15 57 0.87
Sequence Information
- Coding Sequence
- ATGGTATACAAATATACTCGAAAGACTACTAGGGCCTCTTGGTCAGAGGAAACCATGAAAAAAGCGATTGCTGAAGCGAGAAAGTCTTCTATTAAAAGTGCGGCTAAAAACTATGGTATTCCTTTTAGTACGTTGCAACGCCGTGTCAAGTCGGGAATTTCTACAAAAAGTCTTGGTAGATTCAAACCAGTATTCACTATGGAACAAGATGATTTGGCAAATCATTTAAAGGCTTTAGATTCTGTGTTTTACGGTTTGTCGAGGAATGAATTTATGGAATTAGCTGGTGGGTATGCCAAGGAACAAAATATACAGGCGCCATTCAAGAATGAAGTTGCTGGTAAACAGTGGCTAAAAAATTTCTTTAAACGTCATCCTGATATCGTTTTAAGAACCCCAGAGCCGACGTCAATAGCCAGATTGTCAGCTTTCAACAAACCAGCTGTGACACGCTTTTACGATTTGCTAGAGACCACTGTTGAAGAGAATGGCATTCGTCCGAATATGATATATAATATGGACGAAACTGGCGTGCGGACTTCATCCACAAAACCACCAAAAGTACTGTCAGTAAAGGGCAAGAAACAAGTTGGCATGGTAAGCAGTTTGGAACGAGGAACTCTGACAACAGTGATCTGCTGCTGCAGTGCAACTGGATCTTTTGCACCACCgccatttttcattttcaaaagaaAAAGATTCCAGCCACGTTTACTAGACGGTGCATGTACCGGTAGCGAAGGCACTACATCTGATAGCGGATGGGTAAGCGGACCAATTTTTTTGCAGTGGCTAAATATGTTTGTTAATTATGTGAGACCGACAGCTGATTGCAAAGCTCTATTGATTCTAGATAATCATAAATCTCACAAGTACTATCCTGCGCTGGAATATGCAAGAGACCATAATGTCATTTTCCTGTCAATTCCCCCACACACATCGAATAGATTACAGCCACTTGACGTTTCAGTCTACTCGCCATTCAAGACAGCTTTCGAGATCGAAGTAAACAAGTTCCAAAAGCAAAATCCTGGACGAGTAATTTCGCAATATGAAATTGCTCGTCTTGTCAGTTCTGCATACTTGAAAGTGGCTACGCCTCAAAATGCCATGAGTGGATTTAGATCAGCCGGTATACATCCATTCGACCGGCACGTTATAGATGAAGCCCTATACGCCCCATCTGCAGTTTACGAAGTGTCATCTGCACATTCTGCACCAGATGAGCAAGGATCTCCATCACCATCGATATTAACTGAACCAAAAGAACCAGAGGCAATCAATCCTCCGGGATTGTCAACTCCGCCCATTCTGGCAACTGTTCATCCAGATGAAATTACTCCGCCTGGTTTGAtaacaccacctattttagcaactgttcgacCTGATGAAATTACACCACCAAGTTTAACTtctccattaaattttattgataaaccAATAACACCATCAGATCTCACTACACCCATACCAATAGAACAAATAACTCCATCGAGTTCTAAAATTCTAAAACAATTACATCCCTTACCCCAACAACAGTTTAAAAAGGCAAATAGAGGTCGAAAAAGACAAACAGCTGCAATTTTAACTAGCACACCTGTCAAGTTACAGCaagaagaaaaaattaaaaaagctacTCTTAAACTTAATCTCTACATTTGGAGCAAAGAAGAAACATTTGAATAA
- Protein Sequence
- MVYKYTRKTTRASWSEETMKKAIAEARKSSIKSAAKNYGIPFSTLQRRVKSGISTKSLGRFKPVFTMEQDDLANHLKALDSVFYGLSRNEFMELAGGYAKEQNIQAPFKNEVAGKQWLKNFFKRHPDIVLRTPEPTSIARLSAFNKPAVTRFYDLLETTVEENGIRPNMIYNMDETGVRTSSTKPPKVLSVKGKKQVGMVSSLERGTLTTVICCCSATGSFAPPPFFIFKRKRFQPRLLDGACTGSEGTTSDSGWVSGPIFLQWLNMFVNYVRPTADCKALLILDNHKSHKYYPALEYARDHNVIFLSIPPHTSNRLQPLDVSVYSPFKTAFEIEVNKFQKQNPGRVISQYEIARLVSSAYLKVATPQNAMSGFRSAGIHPFDRHVIDEALYAPSAVYEVSSAHSAPDEQGSPSPSILTEPKEPEAINPPGLSTPPILATVHPDEITPPGLITPPILATVRPDEITPPSLTSPLNFIDKPITPSDLTTPIPIEQITPSSSKILKQLHPLPQQQFKKANRGRKRQTAAILTSTPVKLQQEEKIKKATLKLNLYIWSKEETFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281264; iTF_01280210;
- 90% Identity
- iTF_01281264;
- 80% Identity
- -