Pnig000219.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438936.1:2662369-2663124[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-11 1.4e-08 35.2 0.0 1 42 16 57 16 60 0.90
Sequence Information
- Coding Sequence
- ATGGTACGAAATTATGTCCGCAAAACTGATAGAGCAACTAAATATACGCATGATGACTTGTTGGAAGCTATTGCAAAAGTAAAAAGTGGTGAATTGACGGCATACAGAGCCgctattgtttacaatattcctAGACCAACAATAGTAGCTCGAGTGTATGGAAGATATGGCGAAAAATCTGATTCTTTAGGAAGATCTACAGTTATTCCAAAGGAAATAGAAACAAAATTGGCAGAAAACTTACATCTAATGGAAATATACGGATTCGGTTTATCAAGAACAGAAATCATGGAGCTTGTTGGACACTACGtcacaaaaaataacataaacaaTCCTTTTAAAATCGGCATCCCAGGAGAAGACTGGTTTTTGTCTTTCAAAAAACGCCACaatttagctgtaaaaaaaccaCAAGCCGTGGAAAATTCTCGGAAAAAAGCCTGCAATCCTTGGATTATATACCCCTATTTTGATTTGCTGAAAAACACAATGGATGAATTGAAATTACACGATAAACCGTCACAGATATGGAATCTAGACGAGACGAGTTTTTGCAAAGATCCTAGTAAAACCAAAGTAGTCGGTTTGAAAGGATATGCTTCTACAAGAACTATTGCATCACCTGGCAAAAGCAACACTACGGTTTTACTGGGAATTAGTGCCGCTGGTGACAAAACTCCCCCACTAATTGTTTATAAAGGAAAAGACATTTGGGACCAGTGGACGACTAAGGATGACTATCCCGGGTCTGTCTGA
- Protein Sequence
- MVRNYVRKTDRATKYTHDDLLEAIAKVKSGELTAYRAAIVYNIPRPTIVARVYGRYGEKSDSLGRSTVIPKEIETKLAENLHLMEIYGFGLSRTEIMELVGHYVTKNNINNPFKIGIPGEDWFLSFKKRHNLAVKKPQAVENSRKKACNPWIIYPYFDLLKNTMDELKLHDKPSQIWNLDETSFCKDPSKTKVVGLKGYASTRTIASPGKSNTTVLLGISAAGDKTPPLIVYKGKDIWDQWTTKDDYPGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158745;
- 90% Identity
- iTF_01443765;
- 80% Identity
- -