Pdes009160.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- iec1
- Assembly
- GCA_963921415.1
- Location
- OY992850.1:972807-986168[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.7 7.9e+02 1.9 0.9 3 21 454 472 452 476 0.90 2 13 0.00077 0.079 14.5 1.1 1 22 497 518 497 521 0.90 3 13 0.05 5.1 8.8 3.9 1 23 535 558 535 558 0.95 4 13 0.029 3 9.5 1.6 1 22 563 584 563 587 0.87 5 13 6 6.1e+02 2.2 0.4 2 23 608 632 607 632 0.81 6 13 0.004 0.41 12.2 0.2 3 21 639 657 638 658 0.94 7 13 6.2e-05 0.0063 17.9 0.6 1 23 717 738 717 738 0.97 8 13 1.6e-06 0.00016 23.0 0.3 1 23 744 767 744 767 0.98 9 13 0.00062 0.064 14.8 1.4 2 20 792 810 791 812 0.93 10 13 0.026 2.6 9.7 1.9 3 23 818 840 817 840 0.94 11 13 0.011 1.1 10.9 4.2 1 20 847 866 847 869 0.94 12 13 0.0028 0.29 12.7 4.2 1 23 875 898 875 898 0.96 13 13 1.1 1.1e+02 4.6 0.5 1 22 904 925 904 927 0.89
Sequence Information
- Coding Sequence
- ATGCTGTCCCCACGAGACGACGAGGACGATGACAACCATCTCTGCATCAAGTGCAACGCTACCATCGTCGGCCTTGACAACTACGTCAAGCACAGAAAAGAGAGATGCGGCAAAAATACTAAGACTTCCACCATGAAATCAGAACTGCCCAGCATCGACACTTTGGATCCAACCTACAGTCTGGGCGCAGATGTCTTTTTCCAGTCGTTGGAACTCCAAAGCAGTGTCAAAAAGACTTCTTTATCACGCCTAACACCACCTATATCTAAAGCTGTGTTAGACACAAAAACAACCCTCTCTGAAGCGTCCACGTCCAGAGACATCCCACGCATGAGCCCTTTGACCAACTTAAGAGAAGTAGACTGGATTGGAGAACCTAGTTTAAGAATAAACAGCAATGAAGACAACCAAACAAAACTTATTAACGCAGTCGCCAGCATTAGTGGAACTGTCAAAAAAGCGCCAACGTCCACGTATAGTATCGCAAACTTTAATGACTACAAAGTAGATTTTGACGAATCCGAAGACACGGaggatgatgatgaagaagaagTTAATAACACTAATGAGAAATGGAAGCCACCCCCAAATTATACAGGTGGAAAATGGCGACCGGCATCCCCAGATCACGAAGATTGGGACATGAGAGATGAACAAGAACACACGGGGGGTAAATGGAAGCCCATTATGACAGAGTCACATGACCGAGACGATGATTATGAcgttccacctccagggcacaCGAAAGGCAAATGGGTGCCGGGACATGAGAAGACACAAATCATGCAAACGACCATACAAAACAAAGGATCCGTTCAGTATTGGTGCGGACCTTGCAATCGACGATTAGGATCTCGGGCAATATACGAGAAGCATCTTATGTCCAGTCTGCATATGAGAAAAGTACTTCCCGAACATGAATTGGAATTCTCTGGTCATCTTGACCCAATCCGTCCAGTCGACAAACGACCGTTGCGTCCCTCACGGTTCACTAATGATACCATTTACGCACAAAAGAAAAAAGCGAAGACGCCAAAAACTAAATTAGGTGCAAAAATtgaaaagaagaaaagaaagagaAAGCCAATATACGTGCACTGCTCCGGGTGCAAATCGCGAGTGAAGCTGCACCTCATGGGAAAACATTTAATATCGCATTACCATTTCAGGAAAGCGACTGACATTAAAAGCGAAGCGTATCAACAGCTGATTCTTGACAACATTGATGCCATTGTCCATCAAGCGCCATTCCAATGTAGCCCATGTAAATTCTATACGAATTGGCTTTCAAACTTTATGCAGCACTGGTATTCAGAGGAGCATGAAATAAAAACCGCTTCTCTAGACGGAAGATATTGGTGTTCCTTCTGCAAGTACGAATGTGACACTTCTCAGGGAATGCTAGAACACATGTCAGGATCGGACCACAGTGAAGTCGTGGCAGTCATAAACAGGTCCATGCCAATCGTCATTCGAAGAAGAACGATATTTAAATGTGAGACTTGTAACGAAGAGTTTCGGTACAACAttgaactgaaacgacacagttTAAAAACTGGCCATGCACTACCATACACTGCCACTGATGATTATCAGGAACTACATAAGTGCCAATTCTGTAAAGCCAAATTTAAATCATCTCTAACCCTTGCGGCTCATTTAAAATTCAAGCACAAACAGAAGGAATTCCTCTGTTTGGTGTGTTCCAAGATGTTCAAAACCTCTGCAGAAGCGAAACATCATCGTTACACCCTCGAGCATAGGATAAGGAAACAGGAAATTATCAAAGAGAAGGGATTGTCTTCTAaagatttaagtaaaaaatgtcCTTACTGCACTGATGTTAcatatttgaaaaatgttttggaATTGAAAGAGCACATTCGAGTTGAGCatccaaatataaaaaagaaCTGTCCAAAATGTGGCATGTCCTTCATCTTCTCCCAAGAAGTGAGCCGTCACATCAAAAGCAACGCTTGCCAGTTTCCGAGCACAAGTGCCCTCAACTCCTCAATAGTGTGGAACTGCAGTCAGTGCCTCTTCGCCACGGACTCTCAGGCTGAATGCTACTTCCACGAGACCCTGCATGGAGAGGGCGTCAAGGAGATTCGCAGGGTCGGTGACAAGGATAAAGTTGTCCTTAAATATACTTGTCCATTGTGTCCAAAGgtcTTCAAGAAGCAGTCGCTCCGTGCTCACTTGAAACTTCACACCTACGAAAGACCGTTCGTCTGCACGATCTGTGGAGCGAACTTTTCCCGACAGTCAAGCCTGGCCAGCCACACCAAGACGATACACGGGGATGGAGCCAAGGTGGCCAAGGTCAAGAAGGTCGTGATTCCGGTGCCGCAGTCGCTAAAGGACACCTGGAGCTGCTCGAAGTGCACGAAGATTTTTAGCAACCGGAGCGCGCTTAGTCGACACGAATGTGATGCTGGTGAACGTAGCTGTCCTCACGAACGTTGCACTTACGTCGCCACAACCCCTGCTCATTTAGTCAGgCACAGAAGAAGTCATGGTGAGAAGGTGAAATATCATGAATGCAGCGTGTGCCCTTTCAAGACGGACCAGGCCAGTCATCTGAAGCGGCATATGATCTGCCACGAAGGCCGGAAGCCGTACTTCTGTCCACATTGTGATTTCACTTGTGGTAGTTTGGAGAACCTACGAAAGCATGCCATGCGAAAGCACTCAGGCGCGCTACTCTACAACTGTAATATTTGCGCATTTCACTCCAATTTGGCCACAGAGCTGCGCAAGCACCTTGTGGGGGACCACGACGATAAATACGACAAGAAAACTGCAACGCAAGCCGTTACGAAGTGGCTTATGAAAAAGGAATAA
- Protein Sequence
- MLSPRDDEDDDNHLCIKCNATIVGLDNYVKHRKERCGKNTKTSTMKSELPSIDTLDPTYSLGADVFFQSLELQSSVKKTSLSRLTPPISKAVLDTKTTLSEASTSRDIPRMSPLTNLREVDWIGEPSLRINSNEDNQTKLINAVASISGTVKKAPTSTYSIANFNDYKVDFDESEDTEDDDEEEVNNTNEKWKPPPNYTGGKWRPASPDHEDWDMRDEQEHTGGKWKPIMTESHDRDDDYDVPPPGHTKGKWVPGHEKTQIMQTTIQNKGSVQYWCGPCNRRLGSRAIYEKHLMSSLHMRKVLPEHELEFSGHLDPIRPVDKRPLRPSRFTNDTIYAQKKKAKTPKTKLGAKIEKKKRKRKPIYVHCSGCKSRVKLHLMGKHLISHYHFRKATDIKSEAYQQLILDNIDAIVHQAPFQCSPCKFYTNWLSNFMQHWYSEEHEIKTASLDGRYWCSFCKYECDTSQGMLEHMSGSDHSEVVAVINRSMPIVIRRRTIFKCETCNEEFRYNIELKRHSLKTGHALPYTATDDYQELHKCQFCKAKFKSSLTLAAHLKFKHKQKEFLCLVCSKMFKTSAEAKHHRYTLEHRIRKQEIIKEKGLSSKDLSKKCPYCTDVTYLKNVLELKEHIRVEHPNIKKNCPKCGMSFIFSQEVSRHIKSNACQFPSTSALNSSIVWNCSQCLFATDSQAECYFHETLHGEGVKEIRRVGDKDKVVLKYTCPLCPKVFKKQSLRAHLKLHTYERPFVCTICGANFSRQSSLASHTKTIHGDGAKVAKVKKVVIPVPQSLKDTWSCSKCTKIFSNRSALSRHECDAGERSCPHERCTYVATTPAHLVRHRRSHGEKVKYHECSVCPFKTDQASHLKRHMICHEGRKPYFCPHCDFTCGSLENLRKHAMRKHSGALLYNCNICAFHSNLATELRKHLVGDHDDKYDKKTATQAVTKWLMKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00076021;
- 90% Identity
- -
- 80% Identity
- -