Pdes031817.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- ZNF131
- Assembly
- GCA_963921415.1
- Location
- OY992871.1:6810702-6816891[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0081 0.83 11.3 0.6 1 23 66 89 66 89 0.93 2 15 0.019 2 10.1 1.1 1 23 169 191 169 192 0.92 3 15 0.059 6 8.6 0.2 1 23 264 286 264 286 0.95 4 15 2.4 2.5e+02 3.5 0.4 1 19 338 356 338 361 0.91 5 15 0.11 12 7.7 0.4 3 23 392 413 390 413 0.95 6 15 1 1.1e+02 4.6 0.9 1 23 434 457 434 457 0.90 7 15 0.16 17 7.2 0.1 1 23 573 596 573 596 0.92 8 15 0.00026 0.027 16.0 1.5 1 23 617 639 617 639 0.98 9 15 0.0012 0.12 13.9 0.6 1 23 643 665 643 665 0.97 10 15 0.0016 0.16 13.5 1.8 1 23 670 693 670 693 0.96 11 15 0.28 29 6.4 1.7 2 23 700 722 699 722 0.87 12 15 0.00012 0.012 17.0 2.3 1 23 729 752 729 752 0.97 13 15 0.0097 0.99 11.0 1.9 1 20 758 777 758 780 0.95 14 15 3.3e-06 0.00033 22.0 0.8 1 23 786 808 786 808 0.99 15 15 0.0013 0.13 13.8 4.8 1 23 814 836 814 837 0.96
Sequence Information
- Coding Sequence
- ATGAatgaaaatggaataaaattttGTGAAGACAACACAACGTCCCACACTAAAGTTAAAACGATTTCCACTCGTAACAATCCAAAGAACGCGATAGACCTGGAACAGATCGCAAAGAAGAAAGCTGGTAGGAATGGGACCGTAGCCCTCATCACCAGCTCCAACGCGCTGCCCTTCAAGTGGTGGAATAACCACTTCTTGTGCTTTTACTGCGATGAAAAATACATGGATTTTTCGGAACTTGAAAAACACAGCATTACCGAACACCGAGTTAGTGAGAAACTAATCACGAAAGCACTGGTTAGAATTGGCAAGTACCAAAGAGTCAAAGTGAATTTCAGAATTTTTCAATGTGACGCATGTGCTACGAGTAATCAAACGAGTGACACAGATTCTGAGACTCAAAAAGAGATAACACCTGAGAAAGAGAAGAAAGCAGCTAGGCAAAGTGCTATAGCGATCATCCTCAATACgaccgtttgccctttcaggTACAAAGGGATGTTTTTATGCTTTTACTGCCCAAACAAATTTCGGAATATACCAGATCTGACACAACATGTTGCGTCCCATCACGGGAACATTACGGAGAAGGATATTACGAAGACATTCCTCAAGATCAAAAACTATCAtcccataaaaataaatgtgaccACCTTCGGCTGTAAACTTTGTGACCAGGAACTCCATAATTTTGAAGACATGCTACACCATCTTCTTCTCAAACATAAGAAGCCTGTTGACGTACGTAACTATGGAGTGTGGCCTCATAATATTACGGAGGATGACTTCAACTGCGTCCTCTGTGGATTAAAGTTATTTGACTATCGGCTCTTGAACAGACATATTATCGGGCATTATACGAAATCAGCTGTAGGTGATAAAAATGCTAAAGATGATGTTGCACGTGAAACCAACAGTCAAATTTGCTTAAAGGATAATAACACAAAGTCCAGTGCAATCGCCATTTTGTACAACACTAATGTCTATCCGTTCAAGTGGAATGTGTCGTTCATGTGCCTTTATTGCCCAGGACGATTTAAGGATATGCCAGGACTGATGCTGCACTGTGAAGACGAGcataaaaacataacacttgACGAAATAAGACGAGCAATCATAAAATTACGCAAAAGCAATCCTTCTATCAAAGTGAACGTGGTAGATTTCGGATGCAAGCTGTGCGACAGCAAACTTTCGAATTTCGAAGAATTAAAACAGCATTTAAACGAAATACACGACAAGGGAATACATCCAGATACATCTGGAATTTGGCCGTACAGAATTATGAACGACGAGTACAATTGTTTGTTCTGCGATAGTCAGTTTGATGACTTTCGGTTTTTAAACAAGCACGCTATTGAAATGCATTTTGGAAAGCAAATTTACATCAGGAAGCGTAAACGTGATAACACAGCGTcagaaatgaaatataaatCGATAAGCACTCATAACAAACCAAAGGGAGCCTGCGACCTCGAACAAAAACAAATCTATAGGAACGATAACGTGGCCCTCATCTTAACAAACACTAACGCGTTGCCCTTCAAGTGGAATAATCACCACTTCTTGTGCTTTTACTGCGATGAAAAACACATGGATTTTTCTAAACTTGAACAACACAGCACTACCAACCACCAACTTAATGATGAACAAATAAAAGAATCACTCGTCAGAAATGGCAGGCACCTAAAAGTCAAAATGAATTTCAGCCATTTCGAATGCAAGATATGCTCTTATGTAGCTGTAGATTATAAAAGATTAAAAGAGCACCTCGCAGCAAATCACCAAGTAAAATTTGACATGAATAACGATAGAGTGTTTCCTTTCTGGATCAATTCAGAAGGATACAACTGCGCGTTGTGCTCAAAAAGTTTCCATAACTACGCGTTATTAAGCAGGCACATTAACATTCACTTTCCTAATTTTGTCTGCGAACATTGCGGAGTCGGTTTTGCAACTAAACTGCGATTGAGAAGCCACGCTCAAAGTCATACAACCGGATCCTTCAAATGCGATCTGTGTGATAAAGTGTTTCGGCATATAACATTGAAAAAGGACCACATCGAAAGAATTCACATGAAAGTGAAAAAGAATAAATGTCCCCATTGCCAAAAAATGTTTCTTGAGTACTACCAGAAGATAAATCATATGGTGAGGGAACACGGTGTCAAAGCGCCCGAGTTTCGTTGTACGATGTGTAcgaaagtttttatgtttagCGGACAGCTGAGACATCATGAGCGTGTAGCACATTTTAAAACGAGAAAACACACGTGCAATATATGCCAGAAAACATTTCCCGAGGTATCAGTGCTTAAAGAGCACATGGTGTGTCACAGTGGTGAGAGAAATTACGAATGTGAGGTGTGCAAAAAGAAATATGCACGGAAGAAGACTTTGGTGGAGCACATGCGAATACACAACAACGACAAGAGGTTTGTCTGTCAATATTGCAGCAGTGCGTTTGTGCAGAATTGCAGCTTAAAGAGTCACGTCAGAACTCACCACTCGAATGAAGTTAAAATTGAGTGTGACAATGAATAA
- Protein Sequence
- MNENGIKFCEDNTTSHTKVKTISTRNNPKNAIDLEQIAKKKAGRNGTVALITSSNALPFKWWNNHFLCFYCDEKYMDFSELEKHSITEHRVSEKLITKALVRIGKYQRVKVNFRIFQCDACATSNQTSDTDSETQKEITPEKEKKAARQSAIAIILNTTVCPFRYKGMFLCFYCPNKFRNIPDLTQHVASHHGNITEKDITKTFLKIKNYHPIKINVTTFGCKLCDQELHNFEDMLHHLLLKHKKPVDVRNYGVWPHNITEDDFNCVLCGLKLFDYRLLNRHIIGHYTKSAVGDKNAKDDVARETNSQICLKDNNTKSSAIAILYNTNVYPFKWNVSFMCLYCPGRFKDMPGLMLHCEDEHKNITLDEIRRAIIKLRKSNPSIKVNVVDFGCKLCDSKLSNFEELKQHLNEIHDKGIHPDTSGIWPYRIMNDEYNCLFCDSQFDDFRFLNKHAIEMHFGKQIYIRKRKRDNTASEMKYKSISTHNKPKGACDLEQKQIYRNDNVALILTNTNALPFKWNNHHFLCFYCDEKHMDFSKLEQHSTTNHQLNDEQIKESLVRNGRHLKVKMNFSHFECKICSYVAVDYKRLKEHLAANHQVKFDMNNDRVFPFWINSEGYNCALCSKSFHNYALLSRHINIHFPNFVCEHCGVGFATKLRLRSHAQSHTTGSFKCDLCDKVFRHITLKKDHIERIHMKVKKNKCPHCQKMFLEYYQKINHMVREHGVKAPEFRCTMCTKVFMFSGQLRHHERVAHFKTRKHTCNICQKTFPEVSVLKEHMVCHSGERNYECEVCKKKYARKKTLVEHMRIHNNDKRFVCQYCSSAFVQNCSLKSHVRTHHSNEVKIECDNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -