Pdes034093.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992874.1:8111463-8134579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00042 0.043 15.3 0.4 2 23 243 265 242 265 0.96 2 13 5.9 6e+02 2.3 2.1 13 23 282 292 272 292 0.80 3 13 2.4 2.5e+02 3.5 0.2 3 23 298 318 296 318 0.91 4 13 0.4 41 5.9 0.2 2 23 327 349 326 349 0.81 5 13 0.0021 0.22 13.1 0.2 1 19 385 403 385 403 0.97 6 13 0.005 0.51 11.9 1.6 2 23 413 435 412 435 0.91 7 13 0.082 8.4 8.1 0.1 3 19 446 462 445 465 0.95 8 13 0.0035 0.36 12.4 0.4 1 23 473 496 473 496 0.89 9 13 0.0095 0.98 11.1 0.1 3 23 503 523 502 523 0.96 10 13 0.00059 0.061 14.9 0.3 1 23 568 590 568 590 0.91 11 13 0.00019 0.02 16.4 0.7 1 23 597 619 597 619 0.97 12 13 0.11 11 7.7 1.2 1 23 625 647 625 647 0.98 13 13 0.00064 0.065 14.7 6.1 1 23 653 676 653 676 0.95
Sequence Information
- Coding Sequence
- ATGCCAGCGAGGGCCTGTCGCGGTTGTTTGGCCACAGACGTTAGATTGTACAATATTTACAAGAATAACTTGTACGAAGACTTTGGCGAGATCGTCGGGAATCCGATCTTTGAATCAGACGACTTACCCCAGCACATATGTGCATTGTGCAACGCTCAGCTGCGCAAGTTCGTCTCCTTTAGGAACCGGGTCCGCGTTGTACAGGATATGTTAGAAGAATTGCCGCTTAAAGGGATACAGCCAACAACAGCTTACATCAAAACGATTGACCGCCAAAAATGTAACTTGCTCCTCAACTTTGACACACCTATCACGTATACACTGGATTTAGACGCGAAATTCGCTGATCTGACTCCAGATGAAACCGTTGTACCGACTTCTATAGAACCTGAACAAGTTTGTGAAGAATTAGATCAAAACGCAGAAGTTTTTGAACAGACTGATAATATTAATACGGAATTGGAACTTGAACCGATCGATCCATGGTCTCCCGAGCCGTTCGATGACAACGAATTCGATGTACCACCGACACCGGAGCCACCAGTGCCACCACCAACAAAATTCGAAATGAAACCACAAGACATTGTGAATGAGCAGACAAGAATGGAGCAATTCAAAGAGAAATATAATGTTGACATTGTAATACTGACCAAAGAAGAACAAATAGAGATAGTAGCTCAAAAGTTGAAACAAGCTGCCGACGATTGGACCACAAACGCTTACCTTTACTGCTCGGATTGTGGTAAGAGGGTGGTCAGTGCGAAATCCTTGGAAGAGCACAGAAATAAGTTTCATAACGAGTCCAAAGGTCCAGCGTGTGACATCTGCATGTTTAGATTGCCCAAGCATAAAATGCGTAAGCATATGAGAACGCACGAAATGAGAATCATATGCAAAGAGTGCGGTATCACATCACACAGCTATCCGAAAGCAGTGAATCACGCCCGTGTACATGGTCTCGCTCCAAACAAGAAGTGGCCGTGCCCGTATTGCGATGAAGAATTTGATAAAACCGACATAAGAAAGTCGCATATGCAAGAAAAGCATGAAGATATGAAGATGTGGTGCAAATTCTGCGGTTTGATGGGACTTTTTGAGACGGACATCAAAAGACATATTCGTAAAATCCATCCTGAAATGATGAAGTCTGAGCATGTTTGTCCAAAATGTGAACAGCCGTTCGCGTCGAAAGAGGCGTTGGAGAAACATGATACTGCGAGTTGTGAAGATTTGTGCAATTGCTTAGTGTGCGGCGAGCATTTTGAAACTAAAGGTTTACTAAGAGACCATGTGACGGTCAGCCATGGTAAAGAGAAGTTTATTAGACTGGAATTGTGTACAGGTTGCGGGGTGAAGTTCTTTGGGTCCGATGCTTTGGAGAGGCACAATGCAAGCGGACAGTGTGGAACGTGTGTGCACGCTTGTGTCGAGTGTGGCGAGATGTTCAACAGTGTTAGCTCTTTGAATATTCATAAGAGCGATTTCCACAAGATCCTGATACGTGCTTGTGATACTTGTGGCAAAGCGTACGATCCGCCTTCATACCGCGAACACATGCAGCGTATACATTACACTAAGGCAgaagtgaaaaaaattgTTGTTCCACGCTTCATGACGCGAGTTTGGACAGCTCACGGCGGCATCATCACTTCGACGAATCTGGTTGTGAGCAAGAAGAATCATAAAGATGGGGATAGGCCTTTTATGTGCGCCGTCTGCGGGAAAGTTTTCAAgAAACGCTTAGCGTTGAAGAATCACGAGGGTCAGCACGACGCCTCGAAGCGACTCTTCAAGTGCGAGTACTGCGAGAAGGCGTATGTCACGAAGGCGAGGCTTAAAATCCACACAACGATTCACACGGGCGAGAAGCCGTACGCGTGCGAGTTCTGCCCAAAGCGGATGCGCACGATCAACTCTAGGCGGAACCATATAAAGACCCATCTAAACATGCGTCCGCACATATGCCACATGTGTGGGAAGAAGTTCCGCACGTCCACGTGTGTTAAGACGCACATACGAGCCGTGCATCTCCGCCTTCCCACCAGAGGGCCAAAAAAGTGGGAGATGGACAGGCTAAAGCGATTAGATCAAAGCATTGAAGATGATGACACGCCAAATCTAAATCGGGGGGGTCAGCTTGAAGTTGAAGATGTAATAAACAAGTCTCAAAGATTTAGTGGTCATATGAGTGACACTCAAGAAATTGCCGCGGCTCTAAGTCATATTGGTGTGACACAAGAGCGTATAGACGACTCTCAAAGTCATGATGAGGAACAAAGACGTGTAGATGACGTTGGTGTTTATCAAGAGCATATTGAAAAGTCTCAAGGTCATATGGACGAGTCTCAAGGTCATATGGACGAGTCTCAGGGTCATGTGGACCGGACTCAACCACGAATCCGCGATATAAACGCAGTGATACCACCCGAAGGTTATATTGACCGTGAAACAGGTTTGAGAGTGTATCCAGTGAAGCACAAGAGAAAATATGCATCGGACACATTTACGGACAACATTATCAATCAAAAGAAACCTAAAACGGCTGGTGTGAGAAGAAAAGGTAGAAATATACAAAGTTTGGTGCAAGCAGCAGAAGAAGTTGAGAAAAAACCGCCAATTGATGATGAAGAAAATGACGAAGATGATTACTATATGAAAGAAGCACCTAGAGTTATCAAAACAATACATATTAGAAGGAAAAAACGTGTAGACCAAACACAGTATCAAAATACACCTATGCAAGATTTATACACTAACACAGATGATACACACAAGAGACTAGACGCGGAACAGAACACACAATATGTGGTAACACACACGCGAGATTACGTGAACACAAACACAGATTATATTGACGTACACAATCAAGATGATCAAAATAACACACTGTATATTAATGATACGCCTGCTGTGTTTAATACACTCATCAGAGATACGAATTCAAATACGCGTGTTCACAAgaaaaaagttatcaaaaacGTTAGGAAAGTTAAAGGGAAAAGCATGCCGACTTTAAATTTGGATGATCACGCGAACACAGGATATATGATAATGTAA
- Protein Sequence
- MPARACRGCLATDVRLYNIYKNNLYEDFGEIVGNPIFESDDLPQHICALCNAQLRKFVSFRNRVRVVQDMLEELPLKGIQPTTAYIKTIDRQKCNLLLNFDTPITYTLDLDAKFADLTPDETVVPTSIEPEQVCEELDQNAEVFEQTDNINTELELEPIDPWSPEPFDDNEFDVPPTPEPPVPPPTKFEMKPQDIVNEQTRMEQFKEKYNVDIVILTKEEQIEIVAQKLKQAADDWTTNAYLYCSDCGKRVVSAKSLEEHRNKFHNESKGPACDICMFRLPKHKMRKHMRTHEMRIICKECGITSHSYPKAVNHARVHGLAPNKKWPCPYCDEEFDKTDIRKSHMQEKHEDMKMWCKFCGLMGLFETDIKRHIRKIHPEMMKSEHVCPKCEQPFASKEALEKHDTASCEDLCNCLVCGEHFETKGLLRDHVTVSHGKEKFIRLELCTGCGVKFFGSDALERHNASGQCGTCVHACVECGEMFNSVSSLNIHKSDFHKILIRACDTCGKAYDPPSYREHMQRIHYTKAEVKKIVVPRFMTRVWTAHGGIITSTNLVVSKKNHKDGDRPFMCAVCGKVFKKRLALKNHEGQHDASKRLFKCEYCEKAYVTKARLKIHTTIHTGEKPYACEFCPKRMRTINSRRNHIKTHLNMRPHICHMCGKKFRTSTCVKTHIRAVHLRLPTRGPKKWEMDRLKRLDQSIEDDDTPNLNRGGQLEVEDVINKSQRFSGHMSDTQEIAAALSHIGVTQERIDDSQSHDEEQRRVDDVGVYQEHIEKSQGHMDESQGHMDESQGHVDRTQPRIRDINAVIPPEGYIDRETGLRVYPVKHKRKYASDTFTDNIINQKKPKTAGVRRKGRNIQSLVQAAEEVEKKPPIDDEENDEDDYYMKEAPRVIKTIHIRRKKRVDQTQYQNTPMQDLYTNTDDTHKRLDAEQNTQYVVTHTRDYVNTNTDYIDVHNQDDQNNTLYINDTPAVFNTLIRDTNSNTRVHKKKVIKNVRKVKGKSMPTLNLDDHANTGYMIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -