Pdes030416.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992870.1:1356952-1361319[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.47 48 5.7 0.6 1 22 352 373 352 373 0.95 2 17 7.6e-06 0.00078 20.8 3.8 1 23 386 408 386 408 0.99 3 17 1.5 1.5e+02 4.1 0.1 2 23 412 433 411 433 0.94 4 17 3 3e+02 3.2 5.4 3 23 440 461 438 461 0.95 5 17 0.011 1.1 10.9 0.2 2 23 516 538 515 538 0.96 6 17 0.00024 0.024 16.1 4.3 1 23 544 567 544 567 0.97 7 17 0.0013 0.14 13.7 0.4 1 21 571 591 571 592 0.95 8 17 0.0025 0.26 12.9 0.4 1 23 600 623 600 623 0.96 9 17 0.0072 0.74 11.4 2.1 1 23 628 651 628 651 0.96 10 17 0.0015 0.15 13.6 0.7 2 23 664 685 663 685 0.95 11 17 0.042 4.3 9.0 5.0 1 23 691 713 691 713 0.98 12 17 0.0033 0.34 12.5 4.9 2 23 750 771 749 771 0.96 13 17 1.4 1.4e+02 4.3 0.1 2 23 776 797 775 797 0.91 14 17 0.0074 0.76 11.4 0.6 2 23 815 837 814 837 0.96 15 17 0.00033 0.034 15.6 1.4 1 23 843 865 843 865 0.99 16 17 0.028 2.9 9.6 8.8 2 23 872 893 871 893 0.96 17 17 0.0011 0.11 14.1 0.8 1 23 899 922 899 922 0.89
Sequence Information
- Coding Sequence
- ATGGAAAAGCAAGACTTGGATAATTTGCAGCGTCTCAAACAGAAACTCACAACAATATGTCAGGAGCAGAGATTTTGTGCTATTTGCCTGGAAACCAATGATAAACTTTGGTCTGTTAATACAGAATTTGATATAACAGTTGGGGAGTTAAACCATAAGGAGCTTTTAAAAGATATCATTGACTATATTCTCAATAATCAGAGTGAGCAGATTCTAGCCAGCATCTACCTTTGTAGTCACTGTACAGAAAAATCTAttcaatcatatttatttattcgcaaTGCCAGACAACtatcaaatataatttatgaatgtGTGAATGAATTATACTCAAAAACCTTTGATGTTAACAACCAGCTACAACCATTTGATTGTTTCGAAAATGCCAATGTTGTTATTGTCTTAGAACAAGAACATGAAATGAgtaaatatatagatattgGCAAAACAACGGAAATTGTAGCCAAAGAAACTACCAAGAATAAAGAAACAGATAAAGACACAgtaaaaattaagaatacaaACCAAAAAGGTGCTGTATTTGAAACTGAAGTAGTTAGGCTCATAAAAATGGAGGAGACAGTATTAAATAATGGTGAAAATGTTTACATAATTCAAGAGGAAGCCACAAGTGACAACACGGAAGTTAAGTATGAAATGACTAAAGAATTTCTTTCAGAACTAGATACAGATGTTAATAACCCAACTATAAAGCTTGTGCATGCCAgtcaaaaaaatagtttgccaaatgattttgaaaatgaaGAATCCAATGAACATAACTTTGGAAATAATTATATTGAACAAGAAGTCCAAACATTGGATAGTGAGATTCAAAACAGTTATTGtcaaacaactgaaatcacttctCCCAAGGACAATGTTAAATTTATATCAAGTTCAACAGTTCAAGAAGAACCTTATGAAGAAATTGAAATAACATATTTGGATGAAGGAGTTCTGTCAGAAAACGAGACGGACAAAGAGAATTTACAAGCTGGAATAGAGTGTACCATcccaaagaaaaagaagaaaactgTCTCAATCCTAACTTTCAAGTGTTCTAGATGTAGAGAGGTATTGCCATCAAACAAAAGATATCGAGACCACATTAAAATGTGCAGGAAACTGTATATGGATCCCAGTAAACTTATGTTTAGGTGTAAAGTTTGCAATGAGAAGTTCTCCACCCAAAGATCTTTGAACACTCATTACAAGACACACTCTAAGGTGACTTGCAAAGTCTGTCAATTTATAGTAGATGAAGACGATTTGCAAGAACATGTGAAGATCAATCACGAGGAATACACCCATCTCTGTAAATTATGCAACTTCTTCTGTTTCACTGCCGAAAGATTGGAATCACATATAAAAAAGAACCATAGCGGTCCTCAATGTGCCTTGTGCTTTAAAAAGGTAAAAGAAAAAGATCTTAAAACACACAGATGCAAATACAACTGCTTGGAATGCTTAGACAACATTTGCATGCATTACAAATACCTTTTATCTTACAAAGAACAAGTGCTAAATAATGtcactaaaataaaatgtgttgaCTGCGATTATGTATGTCCCAGAAGAGAAGCATTGCTTGGTCATGTAAATCGAGAACATTTAGATCATCACCCATTTACCTGTGACCATTGCAATCAGCAGTTCTACTCTCGTTCCACTCTGAGGTATCACATAAATAtctttcacaaagaaagacatgTTTGCGAATTCTGCGATCAAGAGTTTTCATCCAAAATAACCTTGTTGAACCACATTAAACTTTGCCAGTGTATCGAAAAAGACTACAAATGTGAAAATTGCAAGAGCTCCTTTGGCACTTTAGAAGAACTGGCTAATCATGTCAAATTGAGACATGAAGACGAATCGTTTAGCTGCAATTTGTGTAAGAAAAAATTCTTGAATAGTGTGAAACTCCAGGATCACATGTTCAAAGTTCATAGTGGTGTTCAGATAAAAAGAAAGAGATCTTTACTGATTTGTCCTATATGTGACGAGAAATGTGACAGTAAAAGAGAACTAATGAAGCATGCTGATAGACACGGACCTAACGCCAAGTTTCCATGTAAAGAATGCAAGAAAGAATTCAACTGTATCCGGAAATTGCATGCTCATATCAGAACACACTATGAAGATGTTATACAGTGTGTGGACTGCAAAAAAGTAGTAACGAAGACTTTCTACCCACATCACATGGTATACTGTAACGTTGGAAGGGAGGCTAAGGAGCTTTGCACTTGTGAAATATGCGGAAAGACTTGTACAACCGAAATGCAGTTAAAGTTTCATATGAAAGTGCATTCCGAGAAGGTCCCCTGTCCAGTTTGCAAAAAGCCAACAAAACCCATCTACATGAAAGGCCATATCAAACGCTTGCACAGTAAACCTAGAGAACCTAAAGTTCCAAGACCGAAATACTTAAAGAACATCAAATGCGAATATTGCGGGCATCTAGTATCTCGATACGGGGAATTGGAGACGCATGTGAACAGATTCCATCTAAAAGTGAAGCCCTACAAATGCGATCTCTGCCAAAAGACATTTTTCGGTAAAGAGCGTTTAAGAGACCATTTAATCACACATACAACAGCGAGAAACTGTTATTGCTCTATATGTAAccaaaaatgcgaaaacaaaGCATGCCTCAAACTCCATATGAGAAAACATACTGGTGTGAAACCTTACACTTGTGAGATTTGTGGCGAAAGTTTCAGAACTTCAAGTATAATGAACACCCATAAAGTTAAGAAACATTCGGAGAGGACAGTGGCGTGTCCATTGTGCGAATCTATGTTCCACTTGACGAGAGAAATGAGGAGTCACTTTAAGAAGGTCCATTGGAAGTTTTGgaagctgaaaaataaaaagtttgatcCAAGAGATGTGAAGGAGCTGAGTCCAGCGTTTTATCATCTTTTTGAAGATGGGAgattgcccaaggtagacggtGAAGATCTATACATCTCTTCGAAATTCAATGAAAAATATGAATTAGTCTGA
- Protein Sequence
- MEKQDLDNLQRLKQKLTTICQEQRFCAICLETNDKLWSVNTEFDITVGELNHKELLKDIIDYILNNQSEQILASIYLCSHCTEKSIQSYLFIRNARQLSNIIYECVNELYSKTFDVNNQLQPFDCFENANVVIVLEQEHEMSKYIDIGKTTEIVAKETTKNKETDKDTVKIKNTNQKGAVFETEVVRLIKMEETVLNNGENVYIIQEEATSDNTEVKYEMTKEFLSELDTDVNNPTIKLVHASQKNSLPNDFENEESNEHNFGNNYIEQEVQTLDSEIQNSYCQTTEITSPKDNVKFISSSTVQEEPYEEIEITYLDEGVLSENETDKENLQAGIECTIPKKKKKTVSILTFKCSRCREVLPSNKRYRDHIKMCRKLYMDPSKLMFRCKVCNEKFSTQRSLNTHYKTHSKVTCKVCQFIVDEDDLQEHVKINHEEYTHLCKLCNFFCFTAERLESHIKKNHSGPQCALCFKKVKEKDLKTHRCKYNCLECLDNICMHYKYLLSYKEQVLNNVTKIKCVDCDYVCPRREALLGHVNREHLDHHPFTCDHCNQQFYSRSTLRYHINIFHKERHVCEFCDQEFSSKITLLNHIKLCQCIEKDYKCENCKSSFGTLEELANHVKLRHEDESFSCNLCKKKFLNSVKLQDHMFKVHSGVQIKRKRSLLICPICDEKCDSKRELMKHADRHGPNAKFPCKECKKEFNCIRKLHAHIRTHYEDVIQCVDCKKVVTKTFYPHHMVYCNVGREAKELCTCEICGKTCTTEMQLKFHMKVHSEKVPCPVCKKPTKPIYMKGHIKRLHSKPREPKVPRPKYLKNIKCEYCGHLVSRYGELETHVNRFHLKVKPYKCDLCQKTFFGKERLRDHLITHTTARNCYCSICNQKCENKACLKLHMRKHTGVKPYTCEICGESFRTSSIMNTHKVKKHSERTVACPLCESMFHLTREMRSHFKKVHWKFWKLKNKKFDPRDVKELSPAFYHLFEDGRLPKVDGEDLYISSKFNEKYELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -