Pdes031791.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992871.1:6665897-6669913[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.27 28 6.5 5.0 1 23 218 241 218 241 0.94 2 11 0.93 95 4.8 0.5 2 23 269 291 268 291 0.90 3 11 0.0044 0.45 12.1 1.1 1 23 314 336 314 336 0.98 4 11 0.018 1.9 10.2 0.2 1 23 340 363 340 363 0.97 5 11 1.1e-05 0.0011 20.3 0.9 1 22 368 389 368 391 0.87 6 11 0.011 1.1 10.8 0.8 2 23 398 420 397 420 0.91 7 11 0.0004 0.041 15.4 6.1 1 23 427 449 427 449 0.99 8 11 0.016 1.6 10.4 4.2 3 23 457 477 455 477 0.94 9 11 4.6e-07 4.7e-05 24.6 1.1 1 23 485 507 485 507 0.98 10 11 1.4e-05 0.0014 20.0 1.4 1 23 513 535 513 535 0.99 11 11 0.00038 0.039 15.5 0.3 2 23 548 569 548 569 0.97
Sequence Information
- Coding Sequence
- ATGGAATATATCTTGAGTACCAATATCAAAAAAGAAATTGAGGGGTCTAGTTACGGACACTGCAGATGTTGTTTGGAGGCAGGAAATCATAGAGATATCACTAAAGTTTACATTGAAAATAGTGTGAAAGAAGTTTATGCCGATATGTTCTTGgattgttttaatgtttttCTCTCAACAAACACAAATCTCAGCACACTTATATGCACCAACTGCGTAAGTATGCTGCGACAAGCAAAGAACTTCAAGGCCATGGTGCTTCACACGGAGTCTCAACTGACGAATGCGTTGAATGACTGTACAGGAGACCAAATGGTTTTAGTGAATGTGCCAGTAGCCAAAGACTCATTAGACACAACCATTGGTTTTCAAATTCAAGTGTGCAACTTTGCACCGCCAGGAAAATCCACCCAAAGAAACATTGTCAAATCGGAACTTAAAACCACTGAAGTTTTAAAACATAAGATTGATAATGTTGGCCCTGTTGAATCCAATGCTGATACACTCAGCACAAGTGAGAGCGACCAGATCTCTCTAAGAAAACATCTTCTCGTAGAAAGCAACATCCAAAAAAGAGCTCTACTATTAAACACTTACCAGCTATTAATCCATTCGAATTGTACCTTGTTCAAGGCAAAATCGTACGCTGGCTTCCGGTGTTTCTGCTGCAATGAGATATTCGAAGATTTCAGCAATTTAAGAGAACATTACCACAGCGAACATGTTAATCATTCTGGCATTATCGGAGCTCTCAGGCTGTATACAGTTGAAAGTTTGGTCGTTTACGCTGACGTTACCGATCTGAAATGTACCCAATGCGACTCATCCATGGTTACTCTTAAAGAATTTAAATCTCATCTTGTGAACGTGCATGATATGAAGTTCCGCAAACATGTCACAGATCGAGTCGTCCCTTTGAAGGTGCTAGGGGCGACGACGTTCGAATGTACTATCTGCTCAGCCTCTTACGAAAACTTTGGCTCCATCTGTCTACACATGAACACGCATATAAGAAACTATGTGTGTGATGATTGTGGTAGCGGGTTCGTGACGATATTGCGTTTGAAATACCACATATACACCAGACATAAAGTGGGCACGTTTCTCTGCGATTATTGCGATAAAGTGTTCAATACGAAGTCCAAGTTGAAAGTTCACGTTGATTTTGTGCATAAAATGAAGAAGAATCTCAAATGTAAGAAGTGTCCGGAACGTTTTTCAGACTACTTTGTTCAAAAGAAGCATATGGCTGACGTTCACGGGGAACAGCCTGTGGTGTACCGTTGCAGAGTCTGCAATAAGGTTTTCAGCAGACGCTACACACTGTCTTGTCACATGAAGAGACATTTGAACTTGAAAGATGTGTGTTGTGACGTCTGCTCATACACTTGTTACAGTAAAAGCGAGTTGAAAGCGCATAAAGTGAAACATTTCAAGTCAACAGATGCAAGCTTTGTGTGTTCGATCTGTGATAAATTGTTTGTGAGCAAGAAATCCTTGAAAGTGCATATGAAAACTCATTTCGTTGAGAAAAGATACAAGTGTGATGTATGTGATGAATCGTTTGAATATAGAAAGAGTCTGACCACTCATAAAGAGACGCATGATACAAATGATTTGGCCGATGTCATGAAGAACAACAGGTGTAATTTTTGCGATGAAGTGTACAAAGATATTAATGATCTCAAAGCACACTTGAAAGAGCACAGCGACATCTTAGGGATTTATAAGTAA
- Protein Sequence
- MEYILSTNIKKEIEGSSYGHCRCCLEAGNHRDITKVYIENSVKEVYADMFLDCFNVFLSTNTNLSTLICTNCVSMLRQAKNFKAMVLHTESQLTNALNDCTGDQMVLVNVPVAKDSLDTTIGFQIQVCNFAPPGKSTQRNIVKSELKTTEVLKHKIDNVGPVESNADTLSTSESDQISLRKHLLVESNIQKRALLLNTYQLLIHSNCTLFKAKSYAGFRCFCCNEIFEDFSNLREHYHSEHVNHSGIIGALRLYTVESLVVYADVTDLKCTQCDSSMVTLKEFKSHLVNVHDMKFRKHVTDRVVPLKVLGATTFECTICSASYENFGSICLHMNTHIRNYVCDDCGSGFVTILRLKYHIYTRHKVGTFLCDYCDKVFNTKSKLKVHVDFVHKMKKNLKCKKCPERFSDYFVQKKHMADVHGEQPVVYRCRVCNKVFSRRYTLSCHMKRHLNLKDVCCDVCSYTCYSKSELKAHKVKHFKSTDASFVCSICDKLFVSKKSLKVHMKTHFVEKRYKCDVCDESFEYRKSLTTHKETHDTNDLADVMKNNRCNFCDEVYKDINDLKAHLKEHSDILGIYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -