Pdes030415.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- F56D1.1
- Assembly
- GCA_963921415.1
- Location
- OY992870.1:1349181-1352267[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.021 2.1 10.0 1.4 1 21 271 291 271 292 0.96 2 18 1.4e-05 0.0014 20.0 2.6 1 23 301 323 301 323 0.98 3 18 0.71 73 5.2 5.6 1 23 353 376 353 376 0.97 4 18 0.86 88 4.9 0.1 2 23 431 453 430 453 0.92 5 18 0.0024 0.25 12.9 4.0 1 23 459 482 459 482 0.97 6 18 0.0057 0.58 11.8 0.2 1 19 486 504 486 506 0.94 7 18 0.021 2.2 10.0 2.8 1 23 515 538 515 538 0.97 8 18 1.2 1.3e+02 4.4 3.2 1 23 543 566 543 566 0.95 9 18 0.00013 0.013 16.9 1.6 2 23 579 600 578 600 0.97 10 18 0.0093 0.95 11.1 1.9 2 23 607 628 606 628 0.97 11 18 3.5 3.6e+02 3.0 1.3 2 12 634 644 633 647 0.88 12 18 0.27 28 6.5 4.3 2 23 666 687 665 687 0.94 13 18 0.021 2.2 10.0 0.1 2 23 692 713 691 713 0.96 14 18 2.9e-05 0.0029 19.0 0.3 1 23 730 753 730 753 0.97 15 18 0.00035 0.036 15.6 2.8 1 23 759 781 759 781 0.99 16 18 6.6e-05 0.0068 17.8 7.8 2 23 788 809 787 809 0.96 17 18 0.00098 0.1 14.2 0.5 1 23 815 838 815 838 0.91 18 18 0.16 17 7.2 1.1 2 23 844 866 843 866 0.95
Sequence Information
- Coding Sequence
- ATGCCATCaaccacaaataaaaataagcaagAAGAAGACACCATGGAGTGCTTAAAACAGAAACTGACAACAATACTACAGGCCAATAGATTCTGTGCCATATGTCTGGAGTCTATGGGAAAACTTTGGTCTGTTAATACGGAGTTTGATATTGTAATCGGAAGTTTTAGCCGCAAAATACTATTAGTTGATATAATTgagtacatatttaataatgaGGGCCAGCAAATTCTAGTCAGCTTCTACCTTTGCAGTCACTGTATAGAGAAATCAATCCAAGCATACTCATTTGTTTATAATGCTAAATACTTATCAAATATACTTGATGAAAGTGTAAGAGATttgaacttaaaaactattgatataaataatcaGTTACTATTAATAGATGATCACCAAACAGCTAATGTATTTATAGTGCTTGATAAAGAACATGATGAGTCCAAATTAGCTGATATCAGCAAAACAACTAAGATTCTTGCTGTGGAAACATCAGAAAATTTCTTTCACAAATTAGAAGCTAATAAATACCACCTACACCGAACTAAAACAAAGGCAAACCATGTGAATTCACACCTGATTGCAAATCAGACTATTATTGAAGATGAAAGTAAAGCagatttacaaactttttttctAGAACCAGATATTCAATCATCAGATAATGAAGAAGATTGTCATAAAGACAAagatcaaatatattttaaaattaattcaccATCAACAGCTAATACAGACCAGCACAATCCTCAAATAGAAATCGAACATTTGGCGCCACAAATAAAGAATAAACACAAAGGTTTGCTTACATTCAAGTGTTCTACTTGCAAGGAGGTACTGCCATCTCGCAAAAGCCTTTTACAGCACAGAAGACATTGCAAAAAGCTGTGTGATCATATGTTCAAGTGTAAAGTTTGTAGCAAAACTTTTATCAACCAAAGATCTTTGAATACTCATTATGAATCTCATGCTATGGTAAGATGTAAAATCTGCCAATTCATTGTTGCAGACAATGATTTACCTGAACACGTAAAGATAAATCATGAAGAATATTCCTATTTCTGCAAATCATGCAGCTTTTTCTGCTACACTGCTAAAAAATTAGAAGCACACACCAGAAAGAACCATAGCGGTCCTCAATGCGGTTTGTGCTTCAAATTAGTTAAGGAAAATGATTTAAAAGCACACAGATGCAAATTTAACTGCCCAGAGTGTCCAGAGAATATTTGCATTCATTACAAATACCTTGTATCTTACAGAGAGCAAGTGCAAAATAATGaagctaaaataaaatgtattgacTGTGATTATGTAAGCTCTAAAAGGGAAGCCTTGCTGGGGCATGTCAATAGAGAGCATTTAGACCATCATCCATTTACCTGCGACCATTGCAAGCAGCAATTTTTCTCTCGCACCGCATTAAGGTACCATATTAACGTTTTCCATATGGATAAACACATCTGTGAACTCTGCGATCAGGAGTTCGCCACTAAAACAACTTTAGAAAATCACAGCGAACTTTGTAAGTGTACTGAGAAGGAACACAAATGTGATCATTGCAGAAGTTCctttaatatcttagaagatctGGCGAATCATGTGAGAATGAGACACACAGAAGAATCATTTAACTGTGATTTGTGTAAGAGAAAGTTTTTGACCGATGAGAAACTGCATGACCACATGTTTAAGGTTCATAACGGTGTCCAAGTGAAAAGGAAAAGGTCTCTTGTAAAGTGTCCCATATGCGATCAGAAATGTAGCAGTAAGACGCTACTTTTGCAGCATATAAAATTACACGGGCCAGATGCAAGGCTGACTTGCAAAGTATGTAATGAGGAATTTGATGGCTTGAGAAAATTGCACTATCACATACGAAAACACGATGAAGATGTTATTCAATGTGTGAACTGCAAGAAAGTATTTACGAAAACCTTTTTCCCTCACCACACAGTGTATTGCAACGCAGGCCGCGAACCGAAAGAAAGAGAATGCACTTGTGAAATATGTGGTAGAGTTTGCAAAAGTGACGTCCAACTCAAATTCCACAAGAAGATACATTTGGACAAAGTCCCTTGCCCTGTCTGTAAAAAGATGACTAAGCCAGTTTACTTGCGAATTCATATCAAACGTATGCACAGTAAAGCTAATATAGAAAAAGTTACAAAACCGAGGTACACTAgaaattataaatgtgaaatttgTGACTATCGCTTCGCTCGACAGGCTGAAGTTGAGAATCATGTGAACAGATTTCATTTAAAGATAAAACCGTATCAGTGTGATCTCTGTCAGAAGAGATTTTGCGGGAAAGAACGTTTGCGAGAGCATCTGATTACGCACACAACGGCCAAAAACTGCTATTGCTCTGTCTGTAACAAAAAATTCGAGAATAAGTCATGCTTAAATCAGCATATGAGGAGACATACAGGTGTCAACCCATACACTTGTGAAGTCTGTGGTGAAAGTTTTAGAACATCTAGTATCATGAATGTACATAGAGTAAAGAAGCATTCAGAAAAGACCGTGCCATGCCCTTTATGTGATTTGATGTTCCATTTGACAAAAGACATGAGGACACACTTCAGAAAAGTCCATTGGAAGCagaaaaacaagaaatttgaTCCCAGAGATGTTACAGAATTAAATCCGGCGTTTTATCATCTTTTTGAAGATGGAAGAATACCTAAAGTAGGTGGCGAGGACTTGTGTATCTCGACAAAGTCTAACGTGAAATATATAGACTGA
- Protein Sequence
- MPSTTNKNKQEEDTMECLKQKLTTILQANRFCAICLESMGKLWSVNTEFDIVIGSFSRKILLVDIIEYIFNNEGQQILVSFYLCSHCIEKSIQAYSFVYNAKYLSNILDESVRDLNLKTIDINNQLLLIDDHQTANVFIVLDKEHDESKLADISKTTKILAVETSENFFHKLEANKYHLHRTKTKANHVNSHLIANQTIIEDESKADLQTFFLEPDIQSSDNEEDCHKDKDQIYFKINSPSTANTDQHNPQIEIEHLAPQIKNKHKGLLTFKCSTCKEVLPSRKSLLQHRRHCKKLCDHMFKCKVCSKTFINQRSLNTHYESHAMVRCKICQFIVADNDLPEHVKINHEEYSYFCKSCSFFCYTAKKLEAHTRKNHSGPQCGLCFKLVKENDLKAHRCKFNCPECPENICIHYKYLVSYREQVQNNEAKIKCIDCDYVSSKREALLGHVNREHLDHHPFTCDHCKQQFFSRTALRYHINVFHMDKHICELCDQEFATKTTLENHSELCKCTEKEHKCDHCRSSFNILEDLANHVRMRHTEESFNCDLCKRKFLTDEKLHDHMFKVHNGVQVKRKRSLVKCPICDQKCSSKTLLLQHIKLHGPDARLTCKVCNEEFDGLRKLHYHIRKHDEDVIQCVNCKKVFTKTFFPHHTVYCNAGREPKERECTCEICGRVCKSDVQLKFHKKIHLDKVPCPVCKKMTKPVYLRIHIKRMHSKANIEKVTKPRYTRNYKCEICDYRFARQAEVENHVNRFHLKIKPYQCDLCQKRFCGKERLREHLITHTTAKNCYCSVCNKKFENKSCLNQHMRRHTGVNPYTCEVCGESFRTSSIMNVHRVKKHSEKTVPCPLCDLMFHLTKDMRTHFRKVHWKQKNKKFDPRDVTELNPAFYHLFEDGRIPKVGGEDLCISTKSNVKYID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -