Pdes022423.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992861.1:13345288-13357093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00052 0.053 15.0 0.4 1 23 252 274 252 274 0.98 2 11 8.8e-05 0.009 17.5 1.0 2 23 282 303 282 303 0.96 3 11 6.7 6.8e+02 2.1 0.2 1 19 307 325 307 329 0.76 4 11 0.0086 0.88 11.2 3.6 1 23 334 357 334 357 0.97 5 11 0.00078 0.08 14.5 0.9 1 23 361 384 361 384 0.95 6 11 0.0012 0.12 13.9 0.7 3 22 401 420 399 424 0.92 7 11 0.027 2.8 9.6 0.2 3 23 465 486 464 486 0.97 8 11 5.6e-06 0.00057 21.2 0.6 3 23 499 519 498 519 0.97 9 11 0.00071 0.072 14.6 1.1 1 20 525 544 525 547 0.93 10 11 0.0012 0.12 13.9 0.8 1 19 553 571 553 574 0.92 11 11 3.9e-05 0.004 18.6 0.2 1 23 584 607 584 607 0.98
Sequence Information
- Coding Sequence
- ATGTTCGACTTACGGCTACCCCCACTGGATGATTATGCGAAATCGAAACTAATAGAAACACTAGGTTCCATAGACCTCCCACCATATGCATGTTTTGAGTGTGCTGCCATGATCAAGAACACATACTTTTTCACAGAAAAATGTATGAGGGGTCAGACTGCATTGTGTAATGTTTTAAACTCTATGGGGATGataaCCGAAACGAAGATCAAAGAAATTGatagatataatttaaatcttgttTCACATTTGTCATGCCACACTATTTGTGAAGACAGCATCATTGATGTTAAATATAAAGAGCTGGAGCCAGTAAGGCCTGGACTCTGCAACCAAGATATCAGTCACATTGAACCTAATTTTGTGGTGGTATTAGAAGTTAAGCCTGAGATAAAACATGAAAATGATGTGGATGAAACTAGCTTTACAATTGATGATAATTTACACAAACAAACATTGCAGCCAAAGAGCTTAAGTTTAGATAATGAAGCAATCAAACGCCAGTTGCAAAGAAGCTCTCAAGTGGAAAGAGTTCGACAGTGTAAGCCTTCAatcgataagaaaaaaaaacaaaaactacctAAAGAGCCACCACAAAAATCTGTTAAAAACCTTGTTGAGGAAGCTGCAACTAGCGGATGGAAAGAAAACGTCAACTGGGAAAAGAATTTCAAGATTGATGTGCTCTCGAAAGAAGAGCAGCTAGAAGAGTTAGAGAAGCTCAAGACGTCGTCCAAGTACCTGGACGCCGCGTTCAAGTGCGAGCTCTGCTACAAGGGTTTCGTTGACAAGGCGGCCTGGGAGACCCACCGCTCCCGCCACGACCCGAAAAATGGTGACCCAGAGTGCGAGATCTGCAAATACCGCTTCAAGACGAAGGCGCAAATGCAAAAACATTTGGCCCAGCACGAAACGCGGTACGCTTGCAAGATGTGCCCTTACGTCACCGGTATCAGTTGGAATGCCAAGCAACATGATCAGCGGCACAAAGGGGTGAAGTACCGGTGTAAACACTGCGGCGCATGTTTGGACACAAATACGGCGTTCTTAAGCCACGTGCGGCTGAAGCACCCGTCGGAGTTCGTATGCAGCGAGTGCGGACACTCGTTCGTGAGCCGGCTCGGCCTCACCATGCACAAAACTCGTGCGCATAAGGTAGCTGACAAGTGTGAAGTcggcgcgcgagacgagggGCAGCACTGCGCGGAGTGCGACGTGAAGTTCGCCACGCAGGACGCCTACCGCCGACACCTGAATACCTCGGCGAAGCACAATCACAAACAGATCCAGAACTATAATATGAATGCGTTGCCAAAGCGCCAATGCCGCAAGAAAGGCCGGAGCAAGGAGCGCGCCCGCCCCGTTCCTCGCGCCCGCCCCTTTTCCCGCGCCTGCGAACATTGCCCGGAAGTGCTGGAGTCCCGTCGCGCGTACTGGGATCACTACCGGCGCGTGCACCCCAGGTGCGAGTACCCTAAAGACTGGAAAAACATATGCGATCAATGCGGGAAATCCTTCAAGAACTCGACGTTGCTGAAGTACCACGTGATCACGCACTCGTCGCAACGGCCGTACAAGTGCCCGCAGTGCCCGAAGAGCTTCCACGACGCCATGAGGCTGAGAATGCACCAGCCGAGCCACTCGGACGCGCGCCCGTTCGCCTGCACGCCCTGCGATAAGACTTTCAAATCGAAGAGCGCGCTCTACAAACATAACATGTTCTCTGTGCAGCACGGCGGCTTGCGGCCGCACAAGTGCGAGCTGTGCGACAAGGCGTTCGGCGAGTCCGCCGGCCTGCGCGTGCACGTGCGCACCGTGCACCTCAAGGAGCCCTACCCCAAGCGCGTGCGCAAGCGGAAAGACACAACGTGA
- Protein Sequence
- MFDLRLPPLDDYAKSKLIETLGSIDLPPYACFECAAMIKNTYFFTEKCMRGQTALCNVLNSMGMITETKIKEIDRYNLNLVSHLSCHTICEDSIIDVKYKELEPVRPGLCNQDISHIEPNFVVVLEVKPEIKHENDVDETSFTIDDNLHKQTLQPKSLSLDNEAIKRQLQRSSQVERVRQCKPSIDKKKKQKLPKEPPQKSVKNLVEEAATSGWKENVNWEKNFKIDVLSKEEQLEELEKLKTSSKYLDAAFKCELCYKGFVDKAAWETHRSRHDPKNGDPECEICKYRFKTKAQMQKHLAQHETRYACKMCPYVTGISWNAKQHDQRHKGVKYRCKHCGACLDTNTAFLSHVRLKHPSEFVCSECGHSFVSRLGLTMHKTRAHKVADKCEVGARDEGQHCAECDVKFATQDAYRRHLNTSAKHNHKQIQNYNMNALPKRQCRKKGRSKERARPVPRARPFSRACEHCPEVLESRRAYWDHYRRVHPRCEYPKDWKNICDQCGKSFKNSTLLKYHVITHSSQRPYKCPQCPKSFHDAMRLRMHQPSHSDARPFACTPCDKTFKSKSALYKHNMFSVQHGGLRPHKCELCDKAFGESAGLRVHVRTVHLKEPYPKRVRKRKDTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -