Pdes031761.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992871.1:6476422-6480260[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.3 1.4e+02 4.3 1.0 1 23 46 69 46 69 0.89 2 21 0.13 14 7.4 0.1 2 23 96 118 95 118 0.91 3 21 0.51 52 5.6 3.2 2 23 141 162 140 162 0.97 4 21 0.003 0.31 12.6 0.1 1 23 166 188 166 188 0.98 5 21 3.6 3.7e+02 2.9 4.8 1 23 193 216 193 216 0.95 6 21 0.14 14 7.4 1.2 2 23 224 246 223 246 0.91 7 21 0.00015 0.015 16.7 0.7 2 23 254 276 253 276 0.96 8 21 0.0021 0.22 13.1 3.7 1 23 282 304 282 304 0.97 9 21 3.3e-05 0.0034 18.8 2.3 1 23 310 332 310 332 0.99 10 21 3.4 3.5e+02 3.0 1.1 1 13 338 350 338 352 0.86 11 21 1.1 1.2e+02 4.5 0.4 1 23 423 446 423 446 0.92 12 21 0.0089 0.92 11.1 0.1 2 23 474 496 473 496 0.95 13 21 0.061 6.2 8.5 0.1 2 23 519 540 518 540 0.95 14 21 0.0094 0.97 11.1 0.2 1 23 544 567 544 567 0.95 15 21 0.57 58 5.5 0.5 1 23 641 663 641 663 0.97 16 21 0.017 1.7 10.3 0.2 2 23 690 712 689 712 0.95 17 21 0.039 4 9.1 1.0 2 23 735 756 734 756 0.96 18 21 0.0017 0.17 13.4 0.3 1 23 760 782 760 782 0.96 19 21 0.0028 0.28 12.7 0.3 1 23 787 810 787 810 0.94 20 21 0.0051 0.52 11.9 1.0 2 23 818 840 817 840 0.95 21 21 0.0012 0.12 13.9 1.6 2 23 848 870 847 870 0.95
Sequence Information
- Coding Sequence
- ATGTTAAGAGTGAATGACAGAAAGATAAAAGACGAAGATTATTTGATACCCGAACTGGAGAAGCACCGGAATAACATCAGGGTGATACTCCAGAGCTCCAACGCCACGCCCATCCGGTGTCGCGGCGGCATCGGCTACGCGTGCTGCTTCTGCACCGACCAGTTCCCAGACCCTGCCGACCTAAAAACCCACAATCTAGAGAAACACGACGACAAAGCCAAAGTGAAATTCATGAAAGGCAAAATGATGTACTCCTTCCTCGTCAAACTGGACATAACCTCTTTGAAATGCACCATCTGTGACAACCCTTTAAATACTCTCGTAGATCTTACCGATCATCTCGTTCAAACCCACAACAAAAGATTGTACACGGACATCAAAAATCATATACTCCCGTTTAAGTTTGACGGAGACGCGTTAAGGTGCGTCTTCTGTTCGTGTATGTTCAACAAATTCAAAGTTCTCTTAGAACACATGAATACGCATTATAGGAACTATGTTTGTGAAGTGTGCGATGCCGGTTTCGTGACGAGGAGCATTCTGATGAACCACACGGAGACGCACAAAACTGGCGTCTTCCATTGCGATTTCTGCGAGAAGGATTTCGATACTTTCCGAAAGAAGAAATCTCACGAGAAATCTGTTCATATACATTCGAACTTGTTGAACAAGTGCGGTTATTGTAACGAGAAGTTCAAGAATTATCGGAAGAAAGACGAGCACATAGCCAAGGTACACGGTGTTCGAATTTCTGTGTTGAAGTGTCAGGCTTGCGAGAAAACATTTGCAACTAAAGCGTCGTTAACGATTCATACGAAACGCGATCATTTGATGGAGAGACGGCATACGTGTTCGCAGTGTGACATGAAGTTTTTTAAGACAAGCGAGTTGAAAGAGCATATGGTGAAGCATACTGGCATGAGACCGTTTCAGTGCTTCGTATGTTTTAAGTCGTACGGGAGAAAGAAGACTTTGAACGAGCATATGAGAATACATGTGGACGATAGGAGGTTCAAATGTGAACATTGCAGGCGAAACACAAGATCTCGCGGCAAAAGCACCGAGGAGAAGTTGACTTTGAACAAGCGAATCAACTTCTCCACCTTCATCAACATCAAGCCATCAAGCGGCGGCCGCGTGCGCCACGTCGACCGCTCCTCGCAGAAGCAGAAACGACTCACAGAACTAGACCTGCACTTCGATAACATCAAGACAGTCGTGCGATGCTCCAACGCGACACCCATACGCTGCAAAGTCGGCGACCGCTACGCATGCGGGTACTGCCTCGACCAGTACATGGATCCGCGCGAACTCAAGAAACACACTCTGAACAAGCACAGAGATTCAGACGACAAACTCGAGTGCCTCACCATTCGCTCCTTGTCTAGATATAGCGTTCATTTGGACATCACTGACTTGAAATGCACCATTTGCGATGAAAGCATGAACCGTTTGGAAGAGCTCATCGAACATTTGAAATTGGAGCACGATGAGCCGATTCACTCCCACATCAGAAACCTGATGGTTCCTTACAAGTTTGAGAGCCTCCAGCTGAGCTGCGCCGTGTGCCTTCAGGAGTTTGACGAGTACAGCGACCTCCAAGAGCACATGACTGAGCACTACAGAAACTACGTGTGCGAGTTTTGCGATAAAGCGTTCATTATGAGGAGTGTGATGATTGATCATAAGAAAAATGTGCATCGTCCGAGCCGTAAATCCAGAAAGGCTATTACCAAAACTGGCTCCGAAGAGACTAGAGCCACGCGAAAGAAGACATTGCTTATCCCCCGGACTCCGGTAGTTCCGACCGTTCGCGTGAAGATGATGAAAAGGAAAGAAGTGCACAAGCACCAAGAAAACATTGCCACTCTCATCACGTCCTCGAACGCGACGCCGATCAGGAGCTGGGGCGGCTTCGGCTACTCCTGCAGCTTCTGCTCAGTGAACTGCCTCGACCCTGCAACGCTGAAGGCCCACGCTCTAACACACGACGACCGCGAAAAATCCACCTTCATGGTAGGCTGTTCCATGATCAATTTCATCGTCAAATTGGACATAACGAATCTGAAATGCAAACTTTGCGATCTCTCCGTAGAGAGCCTAAACGAATTGGAGAACCACTTGACATCAACACATAGCAAGGTCTATCATAAAGACCTCAAGAGCCACATTGTTCCTTTCAGATTTGACAGCCAAGAATTACGCTGCGTATTTTGCAAGACTGAGTTCAACAACTTCAAAGTCCTTCTGGAGCACATGAATATGCATGTTCGGAACTACGTTTGTGATGAGTGTGACAGTGGTTTTGTGAATCAAAGAATGCTGCAGACTCACGGCTATAGGCATAAGAAAGGTGTGTTCATTTGCCCGCAGTGCAGTAAAGTGTTCGACAATAAAGTTAAGCAAAAAGAGCACGAAAGGGCGGTTCACATCAGCCTCAATAAGCGGAGTAAATGCGGGTATTGTGGCGAGAAGTTTTCCGATTATACGAAGAAGAACGACCACATGGTGAAGATGCATGGAGCTAAGGCCCTCGTGTTGAAGTGCCAGGCGTGTTACAAGAGTTTTGATAACCAGAGATCGTTGAACGTTCACACCAAGTCGTACCACTTACTTGAAGGGAGAGTGAAGAAATAG
- Protein Sequence
- MLRVNDRKIKDEDYLIPELEKHRNNIRVILQSSNATPIRCRGGIGYACCFCTDQFPDPADLKTHNLEKHDDKAKVKFMKGKMMYSFLVKLDITSLKCTICDNPLNTLVDLTDHLVQTHNKRLYTDIKNHILPFKFDGDALRCVFCSCMFNKFKVLLEHMNTHYRNYVCEVCDAGFVTRSILMNHTETHKTGVFHCDFCEKDFDTFRKKKSHEKSVHIHSNLLNKCGYCNEKFKNYRKKDEHIAKVHGVRISVLKCQACEKTFATKASLTIHTKRDHLMERRHTCSQCDMKFFKTSELKEHMVKHTGMRPFQCFVCFKSYGRKKTLNEHMRIHVDDRRFKCEHCRRNTRSRGKSTEEKLTLNKRINFSTFINIKPSSGGRVRHVDRSSQKQKRLTELDLHFDNIKTVVRCSNATPIRCKVGDRYACGYCLDQYMDPRELKKHTLNKHRDSDDKLECLTIRSLSRYSVHLDITDLKCTICDESMNRLEELIEHLKLEHDEPIHSHIRNLMVPYKFESLQLSCAVCLQEFDEYSDLQEHMTEHYRNYVCEFCDKAFIMRSVMIDHKKNVHRPSRKSRKAITKTGSEETRATRKKTLLIPRTPVVPTVRVKMMKRKEVHKHQENIATLITSSNATPIRSWGGFGYSCSFCSVNCLDPATLKAHALTHDDREKSTFMVGCSMINFIVKLDITNLKCKLCDLSVESLNELENHLTSTHSKVYHKDLKSHIVPFRFDSQELRCVFCKTEFNNFKVLLEHMNMHVRNYVCDECDSGFVNQRMLQTHGYRHKKGVFICPQCSKVFDNKVKQKEHERAVHISLNKRSKCGYCGEKFSDYTKKNDHMVKMHGAKALVLKCQACYKSFDNQRSLNVHTKSYHLLEGRVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281570;
- 90% Identity
- -
- 80% Identity
- -