Pdes031819.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992871.1:6826062-6831537[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.23 24 6.7 0.1 1 23 70 93 70 93 0.88 2 19 1.1 1.1e+02 4.5 2.0 2 23 122 144 121 144 0.92 3 19 0.55 56 5.5 0.8 1 23 217 240 217 240 0.91 4 19 0.15 15 7.3 0.6 2 23 269 291 268 291 0.92 5 19 0.022 2.3 9.9 0.5 1 23 312 334 312 334 0.96 6 19 3.9e-05 0.004 18.6 0.5 1 23 337 359 337 359 0.98 7 19 0.0018 0.18 13.3 0.7 1 23 364 387 364 387 0.92 8 19 0.018 1.9 10.2 3.4 2 23 394 416 393 416 0.96 9 19 0.0059 0.6 11.7 1.6 2 23 424 446 424 446 0.97 10 19 0.12 12 7.6 0.1 1 20 515 534 515 538 0.88 11 19 1.6 1.7e+02 4.0 0.1 3 23 565 586 563 586 0.94 12 19 0.085 8.8 8.1 0.4 1 23 607 629 607 629 0.96 13 19 0.0031 0.32 12.6 0.3 1 23 633 655 633 655 0.98 14 19 0.0026 0.26 12.8 3.1 1 23 660 683 660 683 0.93 15 19 0.0064 0.65 11.6 8.5 1 23 689 712 689 712 0.97 16 19 3.2e-05 0.0033 18.8 2.1 1 23 719 742 719 742 0.98 17 19 0.29 30 6.4 3.6 1 20 748 767 748 770 0.96 18 19 7.1e-07 7.3e-05 24.0 2.7 1 23 776 798 776 798 0.98 19 19 8.7e-07 8.9e-05 23.8 2.0 1 23 804 826 804 827 0.96
Sequence Information
- Coding Sequence
- ATGATGCACCCTAACCTTGGTCATGATGGCAAAGGTGTGGGAACAGAAACGGTGGCGCATTTCAAGGAGGAAAAACAGAATGATGAACAGAAACTAATTACAGTGTCCAAAAAGACAAGGCTTCGCAACAAAACGAGAACTAGCAGGAACAGCGCAATAGAACTAATACGGAGTACAACCATGTTCCCATTCAAATACAACGGACAGTTCATGTGTTTTTACTGTCCAAAACAATTCTTGAGTATGCCAGAACTGGCCAAACACGTTGGCATCGAACACGAAGACGTATCGGAAATggatattaaaaaatcattcgGCAAAGACAACCTAAGCCAGCCGGTCAAGGTGAACATACTGAACTGCATATGCAAACTGTGCGGTGATGATTTGAAACACTTTGAAGATCTGGAACGCCATCTCATTAATACACACACAATAAGCATTGAAATGGGCAACGAGGGGATCCTACCCTATAAAATAATGGATGAAAAATTCGTCTGTGTACTATGtgacacaaaaacaaaagttgGGCGTTTGAGGAAGACATATTCAAGCAGTCTAGACCAGAGTATTAATAGCATGAAACGTGAGAGTGCATTTGAATTAATCCACTGCGCCAACGTCTGCCCGTTCAAATTCCACGGGCTGTTTCTATGTTTTTACTGCTCTATGCGATTCGAGAAGATGCCAGACTTAGTACAGCACTTTAAACTCGATCACAAGTGTGTTACAACTGCAGACACAAGAAAAGCAGCAGCAAAAAACTCAATCACAGTGCCGCTCAAAATAAACGTCTTAGATAACAAATGTAAATTGTGCGACGTGAACATGTCCAATTTCGAAAATCTAAAACAACATCTAATTGACCaacataaaaaacaaatcaGCATCGACAACGATTTCGTCATGGCTTACAGGATAACAGAAACCGAATTCATATGTGTCGTGTGCGAAAGATACTTTGACGACTTTCGTACGCTATCCAATCATTTGAACGAGCATTGGAAATACGTTTGTGACCAGTGCGGCGCGGGTTTCGCTTCCAAATTTCGCTTACGCAGTCATATGAGATACCACGAAAGCGGGACGTATGCGTGTGAAGAGTGCGGCAAAGTTTTCAATAACCATTTGTTGAAGAATCAACATGTTCAGTCGGTGCACATTAGAAGCAAGAAAGTTAAGTGTACGCAGTGTACCGAGATATTCGAGACCCATCATCAGCGGAAAAAGCACATGATTATCGCTCACGGGGCGAAACCGAAAGAACGCAAGTGTCGGTTTTGTCCGAAAATATTCTACACCACGACGAACGTTCGCGCTCACGAGAGACGAACCCACTTGATAGCGACGAGCAAATTCATATGCGACATTTGCAACTATAAGGCGTTCAgtGAGGCAAGTTCGACGATTACTAAAGACCTTCTCATCGAAATAGAAGTTGAAGGCATGGCCATCGATGTTAAACAGAAGCCCGTCAATAGAGAGGGCGTTATCTCGCTCATACACAGCACAAACGTATATCCCTTCAAGTTTACTAGGTTTTTCATGTGCCTATATTGTCCTGAAGAATTTGTGACTATGCCAGAACTTGTACAGCACAATGACCTAAATCACAAGTTCGTAACCGAAAGCGAAATCAAAAAAGCCATCTACAAATGTGAGCCAATCAAAATCAACGTGCTAGATTTCGGTTGTAAACTTTGCGACGCTgaaattgtcaattttgaagaTCTCAAACTCCATCTAATCAACAAACACGAAAAGAAAATCAATTTGGACAATGACGGGGTGTTGCCGTTTAAGATAACTGAGAACGAATTCATATGTGTGCTATGCGGGGTGCAATTGGACCAGTACCAGCTTCTGTGCAGGCACATAAATGGTCATTACAAGAAATTCGTTTGTTCCACATGCGGTGTGACATTCGCTTCTGATCAGCGTTTGAGGATGCATACAATCACACATGAGCAGGGTTGCCATCCGTGTGAAGAATGTGGCAAAGTGTTTAATAAGCACCGGTCGAAACAGCGACACTACCTCGAGGTGCACTTACAAGCCAAGAGGCACAAATGCACGCACTGTTCGGAGAGCTTCAAGACTCATCAGCAACGGCAAAAGCATTTACGAATCGTCCACGGCGTTAAGCCAAGAGAATACAAGTGCGGTTTCTGTACTAAAGTGTATTTCAGAAGCTCGACTCTTCGAGCTCACGAGCGAACGAGTCATATTCAAGCCGATTCCTTTGTATGCGTTATTTGCAATTACAAGTGTTACGACAAGGCCATGATGACTCAGCATATGGTGTGTCACTCGGATGAGAAGAAGTTTAATTGCCAAGTTTGTGGAAAGTGTTTTTCTCGCAAGAAATCCCTGGTTGGGCATATGAGGATACACAATGATGACAGGCGATTTCCGTGCCAGTACTGCGATAAAGCGTTCATACAAAAGTCTAGTTTGACGGGCCACTTGAAAACTCACCATAAGGAACTTCAATTTAAAGGGGAGAGAGAGGAGGATTTGTTTAAAGATAAAGTCTCTGATCAATAA
- Protein Sequence
- MMHPNLGHDGKGVGTETVAHFKEEKQNDEQKLITVSKKTRLRNKTRTSRNSAIELIRSTTMFPFKYNGQFMCFYCPKQFLSMPELAKHVGIEHEDVSEMDIKKSFGKDNLSQPVKVNILNCICKLCGDDLKHFEDLERHLINTHTISIEMGNEGILPYKIMDEKFVCVLCDTKTKVGRLRKTYSSSLDQSINSMKRESAFELIHCANVCPFKFHGLFLCFYCSMRFEKMPDLVQHFKLDHKCVTTADTRKAAAKNSITVPLKINVLDNKCKLCDVNMSNFENLKQHLIDQHKKQISIDNDFVMAYRITETEFICVVCERYFDDFRTLSNHLNEHWKYVCDQCGAGFASKFRLRSHMRYHESGTYACEECGKVFNNHLLKNQHVQSVHIRSKKVKCTQCTEIFETHHQRKKHMIIAHGAKPKERKCRFCPKIFYTTTNVRAHERRTHLIATSKFICDICNYKAFSEASSTITKDLLIEIEVEGMAIDVKQKPVNREGVISLIHSTNVYPFKFTRFFMCLYCPEEFVTMPELVQHNDLNHKFVTESEIKKAIYKCEPIKINVLDFGCKLCDAEIVNFEDLKLHLINKHEKKINLDNDGVLPFKITENEFICVLCGVQLDQYQLLCRHINGHYKKFVCSTCGVTFASDQRLRMHTITHEQGCHPCEECGKVFNKHRSKQRHYLEVHLQAKRHKCTHCSESFKTHQQRQKHLRIVHGVKPREYKCGFCTKVYFRSSTLRAHERTSHIQADSFVCVICNYKCYDKAMMTQHMVCHSDEKKFNCQVCGKCFSRKKSLVGHMRIHNDDRRFPCQYCDKAFIQKSSLTGHLKTHHKELQFKGEREEDLFKDKVSDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -