Pdes017619.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992857.1:7474978-7489943[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00043 0.045 15.3 0.2 2 23 137 158 136 158 0.93 2 11 0.00049 0.05 15.1 2.0 1 23 164 186 164 186 0.96 3 11 0.00014 0.015 16.8 0.1 1 23 276 298 276 298 0.98 4 11 1.4 1.4e+02 4.2 0.1 2 23 305 327 304 327 0.92 5 11 0.00066 0.067 14.7 0.0 3 23 376 397 374 397 0.90 6 11 0.0025 0.26 12.9 0.2 1 23 412 434 412 434 0.93 7 11 1e-05 0.0011 20.4 0.2 1 23 463 485 463 485 0.98 8 11 0.00067 0.069 14.7 0.2 1 23 491 513 491 513 0.97 9 11 0.00038 0.039 15.5 0.3 1 23 519 541 519 542 0.95 10 11 0.013 1.3 10.6 1.2 1 23 555 577 555 577 0.95 11 11 0.0032 0.33 12.5 0.1 1 20 722 741 722 744 0.93
Sequence Information
- Coding Sequence
- atgGAGGGAGAAGAGTTCAACCTCCATTGGGAGGAGGTTGAAGTAAAAcATAGTATTGTGGGAGGTGAAGAAGAAGTTATATGTGGCCTACCCGAAAATGATACATCATATTCAAATgtggctccaggagatattatagaggaAAATGATCAAATGGCAGCTGAGAACCTGATGTACTTAGCACAGGATGTAGTGAACTATACGGAAACAGCAGAGCTGGATCCTAATGTGGAATGTGTCACAGAGGAAGTCATCACTGATGATTGGGTCATACCTGGTGGACAAGAGAGAGTTGAAGTTCCTTTGGATCAGTTGACAAACCCAGTTTCAGATGGTAATAAAGAAGATAATGACATAGATGTTCCACTTCCAACAGACCAGgaTGAGTACACAGCGATGCGGCCGTGGCCGTGCGACTTCTGCTCGCGGCGGTTCCGCAAGAAGGCGGCGCTGATGAACCACATGGTGGCGCACCAGAACGACCGGCCGCACGCGTGCAACCTCTGCGGCGTGCGGTACGTGCGCAAGTGCGACCTCATCAACCATCTGAAGGTGCACGCCTTCGTGCCGGACAACGAGGACGCCATGGACTAtgaagAAATGTTAGACAATCAAGTAACTAAACCAAAGAAGAAAAGGGGAAGACGGAAAAAAAATCCTGAACCAGTTGAAAACGGGGAGATGTGGGAGAACATGACCTCAGCCCGCACGCAGCAGTGGTCGCGGCGCGGGCGGTCgccggcgcgcgcgccgccctcgccgcccgcgccgcccgcgccgcccacgcccagCCCGCCGCCGCCCCCCGCCGACCCCGCGCGCCCCTTCGTGTGCCGCACGTGCGGCATCGGCTTCGCGAGGGAGAAGGCGTTGCAGTCGCACGCTAGGGTTCACGGAGGCGACTCGCCGATCGAGTGCAGCGAATGCGGCGAGCTGTGCTGGTCGCGCGACGCGCTCGCCACGCACGCGGCCACGCGCCACCCGCACCTGCCGCCGCGCAGCAGCCGCGACGCGCCCTACCAGCCCGACGACGAGGACGACGACATGGACTTCCGCCTATCGCCGGTCCCCCACGGTGGAAGCAGCGAGCGCGTGTACGAGTCGATGCGCGGGCCCGAGCTGTTCTGCCAAGACTGCGGCGTGGCTTTCCAGCGAGCCGACCTACTGAGGCGGCACGTGGCCGCGGCGCACAGTTACAAACGCCACGACAGCACGAGCAGCGCGTGGGGCGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACGGACGCGCTGCAGCTGCTGGCCCATGCTGAGGGACACGCTGAGCGGCACCACGCCACTCCTAGATTAAAAAAGACGTCCCGAGGTCGAAATAACGTCTCGTCAAGTAGTAGTTCAAGACAATTCCCGTGTAGAGAATGCGGCAAAGTGTTCGGTTCGCGCAGCTCGCAGCAGATCCACATCAGGATACACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGCTGGAAGGCGTTCGCGGATGGCGGCACGCTGCGCAAGCACGAGCGCATACACACAGGCGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCGTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCGCCAACGGTGGTCCGGCGTTCTGCTGCGTGGTGTGCGGCCGGACATTACATTCCAGTGCGGACCTGGTGCAGCATCTCATTCAGCACTGCGACGCCAACACGGCACTGAAGAGACAACCGCAGACCGGCCCCCGTAAATACAAGCGGCGGCGGAAAATCAAGACGGAAGCGGAGGACGGGTCGCCGGGTCGCCGCTCGTGGGCGGGCTCCCCCTCGCGCAGCCCCTCGCCCGCCTCCCCGCCGCCCGCCTCGCCCCcctcgccgcccgcgcccccctcgccgcccgccccgccctccccgccgcgccgccgcaagcgccgcgcgccgcccccgcccgcgccgcggCCCAAGATGATACACACAGAGGAAACGAGGCCGAGGACCAAGCagGTTCGACAGCGAAGACCGCCTCGGCATCCGGCCGACGACCTGCGCGCGATCCAGCCGCGGTCGCCGCCCGCGACGCGgcgcgcgccccccgcgccctccccgccgcgcgccgcggACTCGGGCGGGCCCTACAAGTGCGAGATGTGCTCCGAGGAGTTCCCACGCCGCGACGCCCTGCTGCTGCACGTGCCGGTCCACATATGA
- Protein Sequence
- MEGEEFNLHWEEVEVKHSIVGGEEEVICGLPENDTSYSNVAPGDIIEENDQMAAENLMYLAQDVVNYTETAELDPNVECVTEEVITDDWVIPGGQERVEVPLDQLTNPVSDGNKEDNDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLINHLKVHAFVPDNEDAMDYEEMLDNQVTKPKKKRGRRKKNPEPVENGEMWENMTSARTQQWSRRGRSPARAPPSPPAPPAPPTPSPPPPPADPARPFVCRTCGIGFAREKALQSHARVHGGDSPIECSECGELCWSRDALATHAATRHPHLPPRSSRDAPYQPDDEDDDMDFRLSPVPHGGSSERVYESMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSTSSAWGEHTCDVCGESCTDALQLLAHAEGHAERHHATPRLKKTSRGRNNVSSSSSSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAFCCVVCGRTLHSSADLVQHLIQHCDANTALKRQPQTGPRKYKRRRKIKTEAEDGSPGRRSWAGSPSRSPSPASPPPASPPSPPAPPSPPAPPSPPRRRKRRAPPPPAPRPKMIHTEETRPRTKQVRQRRPPRHPADDLRAIQPRSPPATRRAPPAPSPPRAADSGGPYKCEMCSEEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00075801;
- 90% Identity
- -
- 80% Identity
- -