Pdes034082.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- ZFX
- Assembly
- GCA_963921415.1
- Location
- OY992874.1:7984317-8007239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0001 0.011 17.2 1.4 1 23 248 270 248 270 0.98 2 12 0.0059 0.61 11.7 0.5 2 23 278 300 277 300 0.94 3 12 2 2e+02 3.8 1.4 1 23 304 326 304 326 0.93 4 12 0.026 2.7 9.7 4.8 1 23 331 353 331 354 0.95 5 12 0.0019 0.19 13.3 0.3 3 23 361 382 359 382 0.95 6 12 0.036 3.7 9.2 1.5 2 20 396 414 395 416 0.93 7 12 9.8e-05 0.01 17.3 1.6 3 23 426 446 425 446 0.96 8 12 0.032 3.2 9.4 0.1 2 23 459 481 458 481 0.94 9 12 1.2e-05 0.0012 20.2 0.5 3 23 500 520 499 520 0.97 10 12 8e-06 0.00082 20.7 0.9 1 23 526 548 526 548 0.99 11 12 2.7e-07 2.8e-05 25.4 1.2 2 23 555 576 554 576 0.97 12 12 1.3e-05 0.0014 20.0 0.9 1 23 582 605 582 605 0.98
Sequence Information
- Coding Sequence
- ATGGATGAGATCGAAGCGTGTCGTTTGTGCTTGTCAACAAGTGTAAAACTTAACGATATGTTCAAATATCAGCTTGATATAGCGTATGGAATCATCACAGGGAAAGAGATGACAACCTCGGATGGTTTGCCCCCATATGCATGTATTTTCTGCAGTGCTCTCCTGTCAAAGAGTGCATCATTCAAACGCATGTGTGACTACTCACAGAACTTGTTACAATCAGCCAAATATCAACAAATGCTGACAACAGAATATgtgcaaagtttaaaaattgCAACTCCATACTCCTACACGATAACAAACAATGACTCTATATACATGAACCACGAAGAcgaacaagaaataaaaaaagaaacagacTGGGAAACCGAAATAGATTGTAAAGTTAAGACGGAGAGTCGCGAGTCCTCAGTAGATTCGGACAGAGGTGAACCGCTCAGCAGTCTTGTTAACAAACGAAGAATCTCAGCCGAACCCCTCACAACAAAACCAACAAGAAAAAGCAAAACCAGAgacaaaattgcaaaaaaagtcAAAGAGAAACAGCGGCCAGTGgggaaacagaaaaaaattgcaGAAAAAATTGAAACGGTCaaagaaaaaaaggttaaaaagaaaaaagaaaaagaaacggGCTACGATTTTCCTGAAGGGGAGGTCGAGGTGATATTGTTGACTAGAGAACAGCAAATAGAGGAGATTCAAGCTAGAAAAACATCAGTTAATTATTTGAGTTCTTTCTACAAGTGCGAGCTTTGCTTCAAAGGTTTTATTTCGGAGTCAACGTATAAAAATCATATGGTGCGGCATGATCCTAGCAGCGGCCCGCTGTCGTGTGAAGTGTGTCACATACGCGTGGCTAGCAACAAGCTGCTACGTTCGCACATGATACAACTACACGAACGGAAGTACGTTTGTAAATTGTGCGAGAACACTTCGAAATCCAAACACGCGGCTTCGGAACATTCGAAATGGCACAGCggtcaaaagtttatttgcaagtttTGCGACGCCGTATTCTCaaaGAAAACAAGTCACCTATCGCATATGCGTATTCACCACCCCTCAGAGCATATCAACTGTGATTTGTGTGGGGAAGCATTCATAGGACAACACGGGCTTAGAATGCATAAGAAGAAGGCTCATAAAGATATTGAAATGAAAGCAGAACCGAAATCGGAAACGCGATGTACGCACTGCAAAGTGCAGTTCCAGAACGCGGAAGCTTTTAAACGTCACACGAGCAACGGACTGTGCGATGTCAACTTAAGGCCATGCGCAAAATGCGGCGAGTGTTTCAGCACGGAGCTGGAACTGAAGAAGCACTTGAAGCAGCACGCGAAAGAAGAgaggaagaagaagaggaaAATGGTCAAGTGTGAGGAGTGTAACTTATCATTCGCAGCGGCGCGGTCGTATTCAATTCACTATCAGcaggtacatTTACATATGCCACAAGCGACGTACCCTTGTCTGTCGAGGCCATCGCATGCGATCTGCGATGTTTGCGGGAAGAAATGTTCGTCCGCGGCGGCGCTTCGGAATCACCTAAGGATACACACGGGAGAGCTACCATTCCAATGTTCAGAATGCCCGAAGAGATTCAGGGTCAACGAACGATTGCAGATTCATCGTCGCATCCACACCGGAGAGCGTCCAATCAAATGCAGCTACTGTCCCAAGGCTTTTAGGCATAAAGCGCAGCTCATACGTCACGTGAGGgtaCACACAGGCGAGAAACCGTATCCCTGCGCTCACTGTGGCAAGGCGTTCTCACTCAACTACACTCGTAAGGCGCACATTAGAACGGTACATATGGGGGTCCCTAGCGGAGCGGCGCCCGATGTTTTCTATGGAACCCCTGTTGTGTGA
- Protein Sequence
- MDEIEACRLCLSTSVKLNDMFKYQLDIAYGIITGKEMTTSDGLPPYACIFCSALLSKSASFKRMCDYSQNLLQSAKYQQMLTTEYVQSLKIATPYSYTITNNDSIYMNHEDEQEIKKETDWETEIDCKVKTESRESSVDSDRGEPLSSLVNKRRISAEPLTTKPTRKSKTRDKIAKKVKEKQRPVGKQKKIAEKIETVKEKKVKKKKEKETGYDFPEGEVEVILLTREQQIEEIQARKTSVNYLSSFYKCELCFKGFISESTYKNHMVRHDPSSGPLSCEVCHIRVASNKLLRSHMIQLHERKYVCKLCENTSKSKHAASEHSKWHSGQKFICKFCDAVFSKKTSHLSHMRIHHPSEHINCDLCGEAFIGQHGLRMHKKKAHKDIEMKAEPKSETRCTHCKVQFQNAEAFKRHTSNGLCDVNLRPCAKCGECFSTELELKKHLKQHAKEERKKKRKMVKCEECNLSFAAARSYSIHYQQVHLHMPQATYPCLSRPSHAICDVCGKKCSSAAALRNHLRIHTGELPFQCSECPKRFRVNERLQIHRRIHTGERPIKCSYCPKAFRHKAQLIRHVRVHTGEKPYPCAHCGKAFSLNYTRKAHIRTVHMGVPSGAAPDVFYGTPVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279531;
- 90% Identity
- -
- 80% Identity
- -