Pdes031280.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrausta despicata
Gene Symbol
zfh1
Assembly
GCA_963921415.1
Location
OY992871.1:3538054-3542666[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.054 5.5 8.7 1.7 1 22 120 141 120 141 0.96
2 25 1.8 1.8e+02 3.9 0.3 2 23 146 167 145 167 0.90
3 25 0.17 17 7.1 1.6 1 21 172 192 172 193 0.90
4 25 0.11 11 7.7 7.2 1 23 203 226 203 226 0.90
5 25 9.4 9.6e+02 1.6 5.2 3 22 231 250 229 253 0.88
6 25 0.00014 0.014 16.8 0.7 1 23 260 283 260 283 0.96
7 25 4.9e-05 0.005 18.3 3.2 2 23 290 311 289 311 0.92
8 25 0.0019 0.19 13.3 2.8 1 23 318 340 318 340 0.98
9 25 8.5e-05 0.0088 17.5 0.2 3 21 484 502 482 503 0.96
10 25 0.32 33 6.2 0.8 1 23 534 557 534 557 0.97
11 25 0.011 1.1 10.8 0.7 1 23 562 584 562 584 0.96
12 25 1.3 1.3e+02 4.3 9.8 1 21 587 607 587 608 0.95
13 25 0.00021 0.021 16.3 0.3 1 23 626 649 626 649 0.94
14 25 0.00035 0.036 15.6 1.8 1 23 655 677 655 677 0.98
15 25 2.6 2.7e+02 3.4 0.4 1 23 711 734 711 734 0.87
16 25 0.00064 0.065 14.8 3.7 2 19 862 879 861 882 0.92
17 25 6.7 6.8e+02 2.1 0.0 3 23 889 910 888 910 0.94
18 25 0.083 8.5 8.1 0.4 2 23 916 938 915 938 0.96
19 25 3.7e-05 0.0038 18.6 1.2 2 23 944 965 943 965 0.96
20 25 0.14 14 7.4 3.3 2 21 969 988 969 989 0.92
21 25 0.00035 0.036 15.6 0.3 1 23 1015 1038 1015 1038 0.95
22 25 0.0033 0.33 12.5 0.8 1 23 1044 1066 1044 1066 0.95
23 25 0.34 35 6.1 0.1 1 23 1072 1094 1072 1094 0.96
24 25 0.0053 0.54 11.9 0.2 1 23 1100 1123 1100 1123 0.94
25 25 0.0033 0.34 12.5 1.0 2 23 1130 1152 1129 1152 0.95

Sequence Information

Coding Sequence
ATGTCCTCTGGAGAGATTCCGTGGGAAATTGCAAAATGGCCAAGCTCAAGGACAGGAACCTTGTTACAGGTTGACCTGTCCAGCTGCCTGCCGGCGACGGCCTGCCCCGCCTGTGTCGCGAGCGCCACGCAAGCCCTGCCATTTATACAGCTTTGCATCGCGTCACAAAAGCGTTGGCACCAAATTACCGACTTTTTGACAGACATGAAAACTAGCGCGAAAGATTCCGCTTGTGTCCTTATAGAAGATGACATCAAATTGATGGACTACCCGAAAAAGAAGTGTGCCAAAACCAAAAAGCAAGTCTTGACGCTGTTGAAGGCTAACATCAGACCAAAAGTAGAACTCCCAGCCCATTTCAAATGCCCTCAATGTGCCAAAAGACACAGCTCACTCTACATGCTTAATAAACACATCAAGAAAATCAAAATGATCATGTGCTACTATTGCAATAAGATTGTCTCGAGGGACACTTTTGCTGAACATGTCAAAAATCTGCACAAACTTCAGGTGTACACGTGCAAGCTTTGCAAAAAGGATTTCACTTTCGAGAAAAGATACATGCTACATGTTATGAAGTGTGACAAAAAAGAAAGAAGCATCGGCTTTGAATGCTGTATGTGTAAGAAGAAATTCGCTACGGAGTCGAGTCTACACGCCCATTGCATGAGGCAGCACAACCCTCAAATTTGTCGAAGCTGCGATATTAAATTCTCGAGCTGGGACTGTTTTGTATACCACTCACGACATTGCGCACACGCAAAACGTGTACCTAAATTCATTTGTGACTATTGCTCGAAGCAATTTCGACTCAAAAACGCTTTACAAGCCCATATTAAACTGAATCATACTGTTGGATGGCAGCTGCAGTGCCATCAGTGCGGCAAGAGGTTTTCTAACCCTGCACATTTGAAGGAACACGATAACACTCACAACAAGGTTGAAGATAGGTATATCTGCGAAATTTGCAACGCGAAATACAGCACTAGGAGAGGCTACGAGAGACACCACAAACGACATTTTGATGAAGAAGGCAATTTGACGGAGTATAACCCTCGGAGGAAAAAACGTCAGCTGTTCGTGGAGGACGACCAAGACTTGCCGAGTGGAGTCTGCAGGCCTTGCTCCGAGAGCGGCCTGGCCGCATACACCTTCCGACGAACTTGCAGGGAATCGTACAACCACTGGTCGCAAGCCGCTGAATACCTCTCCACAATCGGAGACCCCACCGGCTTCGATAAAGCATACTACATATTCTACTGCAATGAGTCAAAAACCATCATTGGTGACCAGACGGTTTCAGCTAAGAGCAAAGAAAAGGCTCTCCATCGAATCAATTCACAATTCCAATCGGTTAACAGTCGATTCAGTTCACAATCACAAGATCAAAAGTGTGATGAGTTGAAgaataaaaagttaattaaaagaTTTCGAAAAGGCAGGTTCGGCTGCCCTGATTGTGGTAAGAAATTCAGCGAGGCAACGTACTTAAACTCGCATCTTAGGAACTCGTTGAAACGGGCGTGTCTTGAGTGCGGCTTGGTGATGCGAAAAGTGAAATTGCCCGATCATTTAAGCAACGCTCACGGGATCGACGTGTACTCGTGTGGCTTGTGTCACGCTGTGTGCGAAGATATGCAATCTCTTGACTCCCATCTAGAAACCGATCATAACGAATTCAAGTTTCACTGCAAAGTTTGCGGCGTGAGTTTCAACGCGGAACGAGCTCTGAGCGCTCACACGTACTCCCATTCGCTGTTCCATTGCAAATCCTGCGGCAAGTGCTACGAGAATCGAAAATGCTATATGCACCACCAGAAATTGTGCAGTGTCACTCCAGTGAAAGCCAATGCGAGCGATCGCAGCGTAGATCGGTACGATTGCGACTATTGTGGAGCGACGTACACCAAAAAACCGTCGTTGCGAGTCCACATCATTCAGAAACATTTAAATGTGTTACCATACGTATGCGAGACGTGTGGTAAGCGTACATCGACGATTTCACACATGAGATCCCACGAGCTGACGCATAAATTGCAACGTCGAGTATTCCAATGTTACTGCGGTGCTGTAATGCGTACAGAGTTAGGTTACAATCTCCATCAGCGGATTCACTCTGGTGTTAAGCCTTACGAGTGTGATGAGTGTGGCGACAAGTTTCTATCGGCTTCTAGAAGGTTGGATCACATTAAGAGGAGGCACAGAAGTGCTAAGGACATGCCTCACGCGTGCTCGGAGTGCACCGCGCGGTTCATGGAAGAGGAAGAGTACGTGCCACTAGGTATTTGCGCAACATGCGCTGCGGCCGCCTTAGCCGTCCAGGAGTTTCGTATGATAACCCAAAGGTCACAGAAAATCTGGCTCGAAGCCATCGACGCCCTCAACCAGATTCCACAAGCGTCAGCACCATCCGTCAAGTCCTTATGCGCTTTCGTCAAACCTGACACATTATCTGTACACACAGTCAAAGACTACACAGGGGGAGATACAAATACGATTTTAAGCCGTTTAAGAAACAGACTGACGAAGAAAAAAGCGGTCACAGGCAAAAAACCGAGAGCACCTAGGTCTGGTCCGGCGTGCACATGCCCTGACTGCGGCAAATCTTTCTACAGCCCTTACTACTTGTGCCTCCACTTTAGCAATAGCGGTCAGAAGGAAGCGTGTGCGACTTGCGGTGCTGTGGTCATCAGGGGGCAGGAAATGAAAGAGCATTTGTCCAAAGTGCATGGAGAAAAGGTGATATCCTGCAAGCAATGTCCACTACTCTTCACCAACGAGCTACGCTTGGaaaaacatgtcaaaaaagCTCACAAGTACGGTTCGCTGACGTGCTCAGATTGTGGACGGACTTTTCCAAGAAAGACGTCGTTCGAGACGCATTCTCAAATGCACGCGGTCCGAACTTGTCGATCATGTGGCAAGCAGTTCACTAATAGAGGATGTTACAGAGAGCACAGATCCAAATGCGAACCGGATGCGCGACCTGATACGCAATCGTTGCCGCGCTACAAGCGTTCTAACGTCAGAGACCCGGCTCAGTTCACGTGCGATTACTGCGGCAAGACGTATCTTTCGCGGCCTCAATTGAAGAATCATATCATTTGGATACACATGGACGTGCGACCGCATCAATGTCAGTGGTGCCAGAAACGGTTCTATACTCCAGCGCGTTTGGCTGAACACACTGTGGTCCATACAAGAGCTAGGAACTTTGAGTGTGACATTTGCGGTGCCAAATTGGTGTCACGAATGGCGGCGGTATATCATAAGCGACGACACACGGGGGAGAAACCGTACCCGTGTGAGGAGTGCGGCGAGAGTTTTATATCTGCGTCTCGGAGATCGGAACATGCTAAGAGGAGACATGGTAAAGGTCCTCTTTTGAAGTGTGTGCACTGTTCAGCTACGTTTGTTAGAGGGTACGAGCTAAAAAAGCACTTGGATAAAGCACATAGAACTAAGACGGTACCCGATTATATTGAAGTGCCTTTGATTACTGAGGTGAACGCTTCGGCTGAGAGTATAACTGTTTAG
Protein Sequence
MSSGEIPWEIAKWPSSRTGTLLQVDLSSCLPATACPACVASATQALPFIQLCIASQKRWHQITDFLTDMKTSAKDSACVLIEDDIKLMDYPKKKCAKTKKQVLTLLKANIRPKVELPAHFKCPQCAKRHSSLYMLNKHIKKIKMIMCYYCNKIVSRDTFAEHVKNLHKLQVYTCKLCKKDFTFEKRYMLHVMKCDKKERSIGFECCMCKKKFATESSLHAHCMRQHNPQICRSCDIKFSSWDCFVYHSRHCAHAKRVPKFICDYCSKQFRLKNALQAHIKLNHTVGWQLQCHQCGKRFSNPAHLKEHDNTHNKVEDRYICEICNAKYSTRRGYERHHKRHFDEEGNLTEYNPRRKKRQLFVEDDQDLPSGVCRPCSESGLAAYTFRRTCRESYNHWSQAAEYLSTIGDPTGFDKAYYIFYCNESKTIIGDQTVSAKSKEKALHRINSQFQSVNSRFSSQSQDQKCDELKNKKLIKRFRKGRFGCPDCGKKFSEATYLNSHLRNSLKRACLECGLVMRKVKLPDHLSNAHGIDVYSCGLCHAVCEDMQSLDSHLETDHNEFKFHCKVCGVSFNAERALSAHTYSHSLFHCKSCGKCYENRKCYMHHQKLCSVTPVKANASDRSVDRYDCDYCGATYTKKPSLRVHIIQKHLNVLPYVCETCGKRTSTISHMRSHELTHKLQRRVFQCYCGAVMRTELGYNLHQRIHSGVKPYECDECGDKFLSASRRLDHIKRRHRSAKDMPHACSECTARFMEEEEYVPLGICATCAAAALAVQEFRMITQRSQKIWLEAIDALNQIPQASAPSVKSLCAFVKPDTLSVHTVKDYTGGDTNTILSRLRNRLTKKKAVTGKKPRAPRSGPACTCPDCGKSFYSPYYLCLHFSNSGQKEACATCGAVVIRGQEMKEHLSKVHGEKVISCKQCPLLFTNELRLEKHVKKAHKYGSLTCSDCGRTFPRKTSFETHSQMHAVRTCRSCGKQFTNRGCYREHRSKCEPDARPDTQSLPRYKRSNVRDPAQFTCDYCGKTYLSRPQLKNHIIWIHMDVRPHQCQWCQKRFYTPARLAEHTVVHTRARNFECDICGAKLVSRMAAVYHKRRHTGEKPYPCEECGESFISASRRSEHAKRRHGKGPLLKCVHCSATFVRGYELKKHLDKAHRTKTVPDYIEVPLITEVNASAESITV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-