Pdes031742.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992871.1:6382454-6388341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.001 0.11 14.1 3.2 1 23 10 32 10 32 0.98 2 25 1.1 1.1e+02 4.6 0.4 3 23 59 80 59 80 0.97 3 25 0.021 2.2 9.9 0.7 2 23 103 125 102 125 0.94 4 25 0.001 0.11 14.1 0.0 1 23 130 153 130 153 0.95 5 25 0.64 66 5.3 2.3 1 11 158 168 158 181 0.79 6 25 0.00034 0.035 15.6 2.2 1 23 216 239 216 239 0.97 7 25 0.014 1.5 10.5 0.7 2 23 246 267 245 267 0.96 8 25 0.036 3.7 9.2 0.6 1 23 357 379 357 379 0.98 9 25 4.4 4.5e+02 2.7 0.2 2 23 404 426 403 426 0.93 10 25 0.00093 0.095 14.2 0.5 2 23 449 471 448 471 0.96 11 25 0.038 3.9 9.1 7.6 3 23 479 499 478 499 0.97 12 25 0.048 4.9 8.8 0.6 2 23 505 527 504 527 0.95 13 25 0.4 41 5.9 2.3 1 23 531 554 531 554 0.97 14 25 6.7e-05 0.0069 17.8 0.6 2 23 561 583 560 583 0.97 15 25 0.00025 0.026 16.0 0.3 2 23 590 611 589 611 0.96 16 25 0.00017 0.017 16.6 3.7 1 23 617 640 617 640 0.96 17 25 0.0033 0.34 12.5 1.7 1 23 701 723 701 723 0.97 18 25 5.5 5.6e+02 2.4 1.3 3 23 751 772 751 772 0.93 19 25 0.21 21 6.8 1.8 2 23 795 817 794 817 0.89 20 25 0.0011 0.11 14.0 0.3 1 23 822 845 822 845 0.94 21 25 0.14 15 7.3 0.1 2 23 849 871 848 871 0.93 22 25 0.29 30 6.4 0.2 2 23 877 899 876 899 0.91 23 25 6.9e-06 0.00071 20.9 0.5 2 23 907 929 906 929 0.96 24 25 0.036 3.7 9.2 3.2 3 23 937 957 936 957 0.96 25 25 0.027 2.8 9.6 0.2 1 23 965 988 965 988 0.87
Sequence Information
- Coding Sequence
- ATGCCGTTTCGAGTTTACGGGAATAAATACAGGTGCTTTTACTGCACAGCAAGCTTCAGCCATTCATTAGAATTAAGAGATCATACGAAAATACACGAGAACGTCAATTTAGTGAAGATTCTGAGAACAAGTGTGACGACATCATTTGCTAAGCTGGATATATTTGAAATGGGATGCAAGCTGTGTAGCCGAGATTTGGACAGTCTGCGAGAATTACTAGAACATTTGCAAAAAGACCACGACGTGAAATGTAGTTTAGAAGCTTTAGATTATATCTTGTGCTTCAAACTGTCCGATGACGTGCTCAAATGCTTGATATGCGATGAGGCTTTCTCATATTTCAGTCCTTTGTTACTGCACACACATAGACTGCACAATCAGAGGCCGTACATATGTGAAATTTGCGGCATAAGCTTTGGAGCTAAAGGTGCTTTAGAGAAGCACTCTCAAAGCGTACATCCAACAAAAAGCTACCAGTGCAGGCATTGTGAAAAGAAATTCACAGCGGTCCATCGAAGGGATAACCACGAAAAACGCATACATGACGAAAGCGAACGAAAATGCCACATCTGCTCCGAAGTGCTAGGAAGTATTTATATAAAGGACACCCATCTTGCCACAGTTCACAATGTATGGAAGTCTGAGTTCAAGTGTGAGGTGTGCTCGCAGATGTTTAGATATAAGTATCTTCTAGTCACTCACAAGAAGCGAGTCCATTTGAAAGAGAAGAATATGACGTGTGAATTGTGCGGAGATAAGTTTTTCGACAGACGTCTGTTGAAACTGCACATGGTAAGGCATAGCGACGCGAAACCCTTTAAATATTATATTGTTGATGCGAAGAGCAGTAACCAAGTATCTAAGAAGAAAATTTTCCTTGCAGGAAGAAAAGGAGTTGCGAAGAAACAGGAAAGAGTTGTCAGAGAAGTCTGTGTTCGCAGAAAAACGTCTACCATCAGAGAAGAGGGCCCGGGGAGCCCGGATGAGAGAACGAAGACAATGAGAGAAAATGTCATTGAATTGCTGAAAATGTCCACACTCATGCCTTTTAGATGGTTGAAGAGTTCCTACCGCTGTTTCTATTGCTATGACGTTTTCCAAGAGCCGAAAGATCTCAGAAGCCACCAAGCCGTGCACACGGCCGAAGAAAAACTCAAATGCATGGATAACTATTGGGACGCAACAGTACATGTTGATGTCTCAAATTTAACCTGCAAACTCTGCGCGAAGACCATGAACGAGTTCTACGAACTAGTCGACCATTTGGTCACTGACCATGACATACCTTTCGATAAGGATACAGGAAGCTGTATGAACCCTTACAAATTGAAAGATATATCGGTGCAATGTGCCTACTGCAGTTTAGAATTCAGAACTCTAGGCCACTTGCTGCTACATATGAACAACGATCACAAAGGCTTTTCTCAGCTGCTATGTGACGTTTGCGGACGCCATTGCAGAAACAAGAACCATTTGAGAGAACACAAGAAGGAGCACGTCAGCAAATCTGTTACATGCTCGATTTGTAACGAAGTTTTGAGCAGCTATCACAAGTTGAGACCACACATGCAGAACGTCCACGATAAAAAGTACAAGTGTTTCGTTTGCGATGAGCAGTTTTTGACACACTACAAAAGAGCGTTGCACATGATGACCGTACACAAGAGCAGAGAAGAGATTAAGTGTCAGTACTGTCCGAAGACGTTTGTCTTTCGCAGTGCAATGATGATGCATTTGAGAGTCACGCATTTGCAAGAGAGGAACACTGTGTGCGGTGTTTGTGGATGGAAAACGACTGGCAAAAGTAAACTGGCGAGACATATGTCGAAGCATACGAACGAGAAGAATTTTAAGTGTTCGGTGTGCGAGAAAGCGTTTAAGACGAAGAAGAATATGATGCTGCATCACAAGAATGTGCATGAGAAAGAAATGCAGATGCAGCCCGCGTTTCCGGTGAATCTGCAGCAGGGAATCCaataCGATCCCAGCAACAAATTGGAAAAACAGTTCCagaaacaaaagaagtttgaAATGGCGAATCTTTTGAAGACTATCATAAAAAGATCCACTTTAATTCCCTTCAGATGGCACGAATGTAAATACATGTGTTTCTATTGCAGTGAGCATTTTGTAGAGAGCTCCAAGTTAAAAGACCATGCAGCGACTCACTCGAATGTGGACATCAATGAAATGCAACTGAGAACCATGTATAAATCTCAGAGAATCAAACTAGACGCATCTGACATCTGGTGCTCTGTGTGCCCGAAACAATTGAACTTTTTTGGTGAATACGTGAAGCATCTTTCTGAATGTCACGACATGACTTACGATGCAGAAGTGGTAGGTCGATTTGAGCCCTACAAACTGACTGATGAGAATCTTAAATGCTTGGAATGCGAATTGGGATTCAGTCACTTCGGTCAGCTATTAAACCACAGTCATCAAGCGCATACTAATCCTGTGTTCTTGTGCGAAATATGTGGTCAAGGTTTCACGAACAAAGAAAGAGTGGAGACCCATATAAAGCAGAGCCACTTCGCCCAAAAATGTGTTTATTGCACAGAGATTTTCCCAACTCGTTACGCGATTGACAAGCACGTAGCATCGGTGCATAGGACCGAGAGACTTCAGTGTCCATTGTGCACAGAAATTTTGCCTAATAGATACCAGAAGAACCGCCATCTGGCTTTCGAGCATGATGTTAAGAGTGTCCAGCTATCTTGTTAcatatgcaataaagtttttgtgaGAAACAGTAAACTGTTACTACATATCAGACGCGTtcatttgaaagaaagaaacgTGGCTTGCGATGTGTGTGGAGTATGTTTTTTCCATGAAACTGATATGAAGAAACACAGAGTGAGACACACACATGATAAAGAGAAGATGTACCAATGTGATATGTGTCCGAAAATGTTTAAATGGATGAAGGATTTGAGTGGGCATATAGCGAATACCCATGGCCATGACTCGGACGAAGGGTGA
- Protein Sequence
- MPFRVYGNKYRCFYCTASFSHSLELRDHTKIHENVNLVKILRTSVTTSFAKLDIFEMGCKLCSRDLDSLRELLEHLQKDHDVKCSLEALDYILCFKLSDDVLKCLICDEAFSYFSPLLLHTHRLHNQRPYICEICGISFGAKGALEKHSQSVHPTKSYQCRHCEKKFTAVHRRDNHEKRIHDESERKCHICSEVLGSIYIKDTHLATVHNVWKSEFKCEVCSQMFRYKYLLVTHKKRVHLKEKNMTCELCGDKFFDRRLLKLHMVRHSDAKPFKYYIVDAKSSNQVSKKKIFLAGRKGVAKKQERVVREVCVRRKTSTIREEGPGSPDERTKTMRENVIELLKMSTLMPFRWLKSSYRCFYCYDVFQEPKDLRSHQAVHTAEEKLKCMDNYWDATVHVDVSNLTCKLCAKTMNEFYELVDHLVTDHDIPFDKDTGSCMNPYKLKDISVQCAYCSLEFRTLGHLLLHMNNDHKGFSQLLCDVCGRHCRNKNHLREHKKEHVSKSVTCSICNEVLSSYHKLRPHMQNVHDKKYKCFVCDEQFLTHYKRALHMMTVHKSREEIKCQYCPKTFVFRSAMMMHLRVTHLQERNTVCGVCGWKTTGKSKLARHMSKHTNEKNFKCSVCEKAFKTKKNMMLHHKNVHEKEMQMQPAFPVNLQQGIQYDPSNKLEKQFQKQKKFEMANLLKTIIKRSTLIPFRWHECKYMCFYCSEHFVESSKLKDHAATHSNVDINEMQLRTMYKSQRIKLDASDIWCSVCPKQLNFFGEYVKHLSECHDMTYDAEVVGRFEPYKLTDENLKCLECELGFSHFGQLLNHSHQAHTNPVFLCEICGQGFTNKERVETHIKQSHFAQKCVYCTEIFPTRYAIDKHVASVHRTERLQCPLCTEILPNRYQKNRHLAFEHDVKSVQLSCYICNKVFVRNSKLLLHIRRVHLKERNVACDVCGVCFFHETDMKKHRVRHTHDKEKMYQCDMCPKMFKWMKDLSGHIANTHGHDSDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -