Pdes031821.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992871.1:6832122-6836287[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.002 0.21 13.2 1.5 2 23 85 106 84 106 0.95 2 21 0.00053 0.054 15.0 0.2 1 23 110 132 110 132 0.96 3 21 1.1e-05 0.0011 20.3 0.5 1 23 137 160 137 160 0.97 4 21 0.19 20 6.9 3.5 1 23 166 189 166 189 0.93 5 21 0.49 50 5.7 0.6 1 20 196 215 196 219 0.88 6 21 0.0026 0.27 12.8 0.1 1 23 286 309 286 309 0.92 7 21 1.3 1.3e+02 4.4 0.9 3 23 339 360 337 360 0.93 8 21 0.0055 0.56 11.8 0.2 1 23 382 404 382 404 0.98 9 21 0.01 1.1 10.9 0.3 1 23 408 430 408 430 0.96 10 21 0.029 3 9.5 0.4 1 23 435 458 435 458 0.95 11 21 0.0022 0.22 13.1 2.6 1 23 464 487 464 487 0.94 12 21 2.9e-05 0.003 18.9 0.2 1 23 494 517 494 517 0.97 13 21 1.9e-05 0.002 19.5 0.3 1 23 523 545 523 545 0.97 14 21 3.2 3.3e+02 3.1 0.2 1 23 676 699 676 699 0.80 15 21 0.0072 0.74 11.4 0.1 1 23 771 793 771 793 0.97 16 21 0.00078 0.08 14.5 0.2 1 23 797 819 797 819 0.98 17 21 0.0014 0.15 13.6 0.3 1 23 824 847 824 847 0.95 18 21 0.0089 0.91 11.2 0.4 2 23 854 876 854 876 0.93 19 21 0.0079 0.81 11.3 5.4 1 23 883 906 883 906 0.96 20 21 0.00012 0.012 17.1 4.9 2 23 913 934 912 934 0.96 21 21 2.8e-05 0.0029 19.0 0.7 1 23 940 962 940 962 0.99
Sequence Information
- Coding Sequence
- ATGATAGAACTGACGCAACATGTTGGGCTCCAACATAAAGACCCATCGGAAGAAGACATCCGGAAAGCAATCCTTGGCGCAAGCCATACTCCGCCGGTCAAAATCAACATACTGGACTACGGCTGCAGACTCTGCAATGATGAGCTTGACAACTTTGAAGACCTAAAACACCATTTAGTCGCAAAACACAAAAAGAAAATCGACCTTGATAATGATGGAGTTATTCCTTACAAGATAACGGAGAACGAATGCACTTGTGTGCTTTGTGGCATGCAGTTTGAGCAGTACATACTTCTGACTAAGCATATAAATAAGCATTTCAAGAAGTTTATGTGCCATCAATGTGGAGTTGTTTTTGCATCCAATGTTCGTTTGAGAGCACATGTTGCAAATCACTCGGAGGGCTCCTATCCGTGTGAAGAATGCGGTAAAGTGTTCACTAAATCATCAAAGAGAACGGTGCACCTTAAATCGGTCCACTATAAAATAAAGACTCACAAATGCCTTATCTGCTTGGAGACCTTCGTGAACTACCATCAAAAGCGAAAACACCAGATTGATGTTCACGGCGTAGAGAAAAAGGAGTACGCGTGTAGATATTGTCCGaatgttttcaattttaattcgGGTCGTAGACAGCACGAGGTTCTGTACCATCTGCCACCGCAAACTTTTAAGTgtGATGCTCCGAGTCCAGACGTTATTACggaaataaatgaaacaacaGATTTATCAACATTCATAGGGAACAACGAagcaaagaaaataaatgacCAAGTGAAAGCTAGAAAGAAGCAAGCGACAATACTACTGGAGTTCTCTAAAATATGCCCCTTCAAATGGACTAAGAACCTCTATATTTGTTTCTACTGCGAACAACCATTCAATGACCCTGTCCAACTAAGAGAACATAATATTATTGAACACATGTCTTTGAATTCATCAAACATAAAAGAGGCGATTGCTAAACTTAAGAAATACGAGTTAATAAAAGTGGATATCACAAACGTATGCTGTAAGATCTGTGAAGATTACATAACAAATGTATCAGATCTAAAGAACCATTTGTTGATGAAACACAATAAGGCTGTTGATTTGAAATCCAGTGACGGCCTCCTTCCATTTAAGCTTACGATAGAAGATTTCGAGTGTGCTGTATGCGATGATAGGTTTGCCGAATTTAAATCACTCAACCAGCACATGAATGTGCATTTCCAGAATTTTATCTGTGAACAGTGTGGGTCAGGGTTCATAACCCCAGAAAGACTGAGGACGCACTCCTTCACTCATGAAAGCGGGTCGTTCCCCTGCATGAGTTGTGATAAAGTTTTCAAGTCTACCAACGCTAAAAATGAGCACTACGCAACGGTTCACATGCAAGTCAAAAGGCACAGATGTCCGCAATGTCCAGAGACCTTTCGCAACTACTTTCAAAGAAATAAACACATTACCAACGTCCACGGACTCAAGTTAAAAGAATTCAAATGCACAATGTGCCCAAAAGTCTTCACAGTAAGCGGAAAGTTAGGAGTTCACATTAGAAATGTCCATCTCAAAGTAAAAAGATATGCATGTGATGTTTGCGAGTGGAAGTTTTACTCGAAGTCTGAACTGAAGGAGCATATGGTCAGGCACGGGGGAGAGAGAAAATATCAATGTGGGACCGACCTGACAATATTAACGGCGGATTCAAAGAAGCAGAAACGCGTCGTGCCGCTCTTTCAAGTCCAATACGATCGCAGCTTGTGTAGGCCTCTGGGGACAATTACTGACTTCAGTAGAttgaaattacgaaaactgATGCCTAACGTAAGATTACGCACCACACCGAGAACCTTTACACCATCGCGAAGCCCGTCCCCCGTATCACTTGGAGATAGGTCACCTTCACCGCCCAAAGACAGCCTGCCAACTCCCAAAATCAAGGAATCGGCAGCGAAGCTAAGACATCCTGACGTCAGACAAAACGCCCTAACTATCTTTGAGTTCTCAGCTGTTTACCCATTTATTTACGGCAACAACAAGTTTAAATGCTTCATCTGCTCACAGCCCTTTTTAGAAACAGCACCTCTAAGCGTCCATATGAGCGAATCGCATACATACGCGCCGCTGAAGAGGCTGCTTCACAATCGTAGGGAGAATATTCTCAAAGTAGATGTCACTGACGTCACTTGCAAAATATGCTCAGCCAAACCCAACGGGCTAGCAGAATTGAAAGTGCATCTCAAAGAAGCACACCAAAAACCGATCGATCCCGATCTGAATGACAACCTAATACCGTTCAAGCTGGGAACCAACGCTGACGGAACCTATAACTGCGTCCTGTGCGACGAGCGATTCATCAAAGTCCGCCTTTTAGTTATACATATGAGCATCCACTTTAATAACTACAGCTGTGAGGTTTGTGGATCTGGATTCATGACGTTAAGACTGCTGAAGAAGCATTTGGAAGTGCACGAGGGTGGAAATCACCCTTGCGATCGCTGCGACAAGGTATTCCCTACAGCCTACAAGCGAATCCTTCATATCAGAGGTGTCCATTTGAAGCAGTTGGTGCGTAGATGTCCGATGTGTCCAGAGAGGTTCAACtcgaattataaaagaacaATACACCTCCAAGATGTGCATAATCAATCGACGCGTGTTCACAAGTGCGATATTTGTGGTAGGGCGTTCAATCTGAAATACCACTTGATTTGTCACACCCGCTCTGTGCATTTGCAAGAGAGGAACCAACAGTGCGACGTGTGTCACCAGAGATTCTGTAATAAGGAGACACTAAAGAGACACATGGTCATTCATACTGGCGAAAAGAATTACAAATGTGAAGAGTGTGGTATGGCGTTTTTGCGAAGAAAGAACTTAAAAGATCATCTCAGACTTCACGGTATAGGCTGA
- Protein Sequence
- MIELTQHVGLQHKDPSEEDIRKAILGASHTPPVKINILDYGCRLCNDELDNFEDLKHHLVAKHKKKIDLDNDGVIPYKITENECTCVLCGMQFEQYILLTKHINKHFKKFMCHQCGVVFASNVRLRAHVANHSEGSYPCEECGKVFTKSSKRTVHLKSVHYKIKTHKCLICLETFVNYHQKRKHQIDVHGVEKKEYACRYCPNVFNFNSGRRQHEVLYHLPPQTFKCDAPSPDVITEINETTDLSTFIGNNEAKKINDQVKARKKQATILLEFSKICPFKWTKNLYICFYCEQPFNDPVQLREHNIIEHMSLNSSNIKEAIAKLKKYELIKVDITNVCCKICEDYITNVSDLKNHLLMKHNKAVDLKSSDGLLPFKLTIEDFECAVCDDRFAEFKSLNQHMNVHFQNFICEQCGSGFITPERLRTHSFTHESGSFPCMSCDKVFKSTNAKNEHYATVHMQVKRHRCPQCPETFRNYFQRNKHITNVHGLKLKEFKCTMCPKVFTVSGKLGVHIRNVHLKVKRYACDVCEWKFYSKSELKEHMVRHGGERKYQCGTDLTILTADSKKQKRVVPLFQVQYDRSLCRPLGTITDFSRLKLRKLMPNVRLRTTPRTFTPSRSPSPVSLGDRSPSPPKDSLPTPKIKESAAKLRHPDVRQNALTIFEFSAVYPFIYGNNKFKCFICSQPFLETAPLSVHMSESHTYAPLKRLLHNRRENILKVDVTDVTCKICSAKPNGLAELKVHLKEAHQKPIDPDLNDNLIPFKLGTNADGTYNCVLCDERFIKVRLLVIHMSIHFNNYSCEVCGSGFMTLRLLKKHLEVHEGGNHPCDRCDKVFPTAYKRILHIRGVHLKQLVRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCDICGRAFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNYKCEECGMAFLRRKNLKDHLRLHGIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -