Pdes032689.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992872.1:7973630-7979298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.01 1.1 10.9 0.4 2 23 214 234 214 234 0.97 2 12 4.6e-05 0.0048 18.3 1.7 1 21 242 262 242 263 0.95 3 12 5.7e-05 0.0059 18.0 1.2 2 23 300 321 299 321 0.98 4 12 0.00018 0.019 16.5 4.0 1 23 328 350 328 350 0.98 5 12 0.00038 0.039 15.4 1.5 1 23 358 381 358 381 0.93 6 12 4e-06 0.00042 21.7 4.6 3 23 402 422 401 422 0.98 7 12 2.9e-07 3e-05 25.3 1.0 1 23 428 450 428 450 0.96 8 12 6.2e-06 0.00064 21.1 0.3 1 23 456 478 456 478 0.99 9 12 6.7e-07 6.9e-05 24.1 0.7 1 23 484 506 484 506 0.98 10 12 2.4e-05 0.0025 19.2 0.5 1 23 512 534 512 534 0.98 11 12 3.4e-05 0.0035 18.7 2.1 1 21 540 560 540 562 0.96 12 12 2.9e-06 0.0003 22.1 0.1 1 23 568 590 568 590 0.97
Sequence Information
- Coding Sequence
- ATGGATCTTCCGAACGTAAACCTGCATAAAATCTGTCGGACTTGTTTGCTGGAATCCTCTCACATGGTGTCTTTATCGACCAAAATGGACGGTAACAATCGAACTCTGTTCGACGTATtgctatttgttttaaataacaacGTTACTCCCGGTGAAAAGTTTCCGAATCAGATATGTGGTGACTGCGAGATGTTACTGTACCGTATAGATGAGTTCAAAAGGCGCTGCGACCAATCTGAGAGTATTTTAAAAGAGATTGTTGATGCCAGTCAGTCTGGGCCTTCGCACGGTGTCAAGCTGGAAACTCAGACGAAAAATGAGAAAGAACCCTTCCTTAACTTCCTAGAGCTAAATCCTGCCAATATCCTGGATTCTATAAAGGGAGATGCAGTGGAAATCGAGTTTGATTGCGTCAAAGCTGAATCAAAAATCAATGTAAGAGACGGTATTAAAGAGGAGTTTACAGACTACTCAGAGGATATTAACTTTGCTGACAACACAGAAAATGTATCAGATAGTAATAATCTTTACAACTGTCCGTGTGGAGAAGGATTTTCCACATTAAATGAATGTGAGGCTCACTTGGATAACAACAAATGTTCTAAAGCacttcaaaacaatattttaatgttaccaGCTAAATGTGACCAGTGTGGCTTGGTATTCAAATCTGACGAAATCAAGGAACATGTAAAAACTCATATAAAACCTAATTCTAAGTGCTATAAGTGTGTGTTTTGTAAGAAAGAGTTTTCAAAGAGAAGCAATCTTCAAAGTCATTTAGAAAAGAAAGTTTGTTCTAACACTAAAAAGAAACTAGCAAAGGTAGCTAAAAAAGTGCTCAAACGTAAAGTGAGTGAAACACCTGATGATGGTGCATTAAAAATGATTCCTGTCAAATGCGAGCAGTGCGACATAGTTTTTAAGAAcatgaaaacatttaaaaccCACATTCAAACACATAAAAGTGTCCCAGAATTCTTCCAGTGTTCACAATGCATGcggaaatttaaaaagaaatcatCACTCATAACTCACATGAAAAATCACGAAGAAAAGGACAATGTTAAATATGTATGTGAAATTTGCAAACGCGAGTTCAAATATCAGGCACATCTCGATAACCACAATCAAAATGAACACAGTAAAAAAAGTATAGAAATGTATCCTATGGACGCAAATAACAGTGATAAAAAACGTCATTGCAAGCtttgtaataaatcatttaGTATGCAGTCAACTTTAACGGATCATATGAGGACGCATACGGGAGAGAAGCCATTCCTTTGTTCAATATGTGGTAAAGGTTTTACTCAGAAGACTAATTTAGGACAGCATATGAGAAGACATTTGGGTTTAAAGCCATTTAAATGTACTGAGTGTGAAAGAGGGTTCGTCTCCAAAGGCGAGCTAGACGCGCACCTCCGCAAGCACTCAGGCGCGCACCCGTTTGTGTGCGACGAGTGCGGCAACGGGTTCACCACGTCGAGCTCGCTGCGGAAACACAAGCGGGTGCACACGGGGGAGAGGCCGTATGCTTGTGACTTGTGTCCCATGAAGTTCTCTGTGTCGGGCACTCTAAAAAGCCACCGGCGTACCCACACCGGTGAAAAACCTTACCAATGTTCGTACTGCGAGAAGGCCTTCGTACAGCGCCAAGACCTGATCTCCCACATTCGCTGTCACACCGGTGAGAGGCCTTTCGCTTGTGCGCAGTGCGGCCAGGCCTTTAGGAAGCCGTCGGCTTTGAAGGCCCACGCTAGGACGCACAGGGGCCCCGGGGTTCCCGGGCCTGGAGTGCTGGGGCCCCCGTAG
- Protein Sequence
- MDLPNVNLHKICRTCLLESSHMVSLSTKMDGNNRTLFDVLLFVLNNNVTPGEKFPNQICGDCEMLLYRIDEFKRRCDQSESILKEIVDASQSGPSHGVKLETQTKNEKEPFLNFLELNPANILDSIKGDAVEIEFDCVKAESKINVRDGIKEEFTDYSEDINFADNTENVSDSNNLYNCPCGEGFSTLNECEAHLDNNKCSKALQNNILMLPAKCDQCGLVFKSDEIKEHVKTHIKPNSKCYKCVFCKKEFSKRSNLQSHLEKKVCSNTKKKLAKVAKKVLKRKVSETPDDGALKMIPVKCEQCDIVFKNMKTFKTHIQTHKSVPEFFQCSQCMRKFKKKSSLITHMKNHEEKDNVKYVCEICKREFKYQAHLDNHNQNEHSKKSIEMYPMDANNSDKKRHCKLCNKSFSMQSTLTDHMRTHTGEKPFLCSICGKGFTQKTNLGQHMRRHLGLKPFKCTECERGFVSKGELDAHLRKHSGAHPFVCDECGNGFTTSSSLRKHKRVHTGERPYACDLCPMKFSVSGTLKSHRRTHTGEKPYQCSYCEKAFVQRQDLISHIRCHTGERPFACAQCGQAFRKPSALKAHARTHRGPGVPGPGVLGPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -