Pdes034096.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992874.1:8154823-8156655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.6e-06 0.00068 21.0 0.7 2 23 97 119 96 119 0.94 2 16 0.017 1.7 10.3 2.4 3 23 128 149 127 149 0.95 3 16 0.00023 0.023 16.1 3.3 3 23 157 178 155 178 0.92 4 16 4.1e-05 0.0042 18.5 2.1 3 23 187 208 185 208 0.95 5 16 3.7e-05 0.0038 18.6 0.1 3 23 216 237 214 237 0.94 6 16 0.00099 0.1 14.1 0.2 1 23 244 267 244 267 0.96 7 16 9.1e-06 0.00093 20.6 0.3 3 23 274 295 273 295 0.97 8 16 0.00013 0.013 16.9 0.5 2 23 311 333 310 333 0.95 9 16 0.0032 0.33 12.5 3.6 2 23 341 363 340 363 0.96 10 16 4.1e-06 0.00042 21.6 0.9 2 23 369 391 369 391 0.97 11 16 0.012 1.2 10.8 4.5 2 23 399 421 398 421 0.94 12 16 3.9e-05 0.004 18.6 2.2 1 23 427 449 427 449 0.97 13 16 0.00016 0.017 16.6 0.3 1 23 454 477 454 477 0.98 14 16 0.0019 0.2 13.2 0.1 3 20 502 519 500 521 0.93 15 16 0.033 3.3 9.4 0.1 6 21 538 553 534 554 0.89 16 16 0.017 1.8 10.2 0.5 2 21 569 588 568 589 0.93
Sequence Information
- Coding Sequence
- ATGGACAGTAATCCAGAACATATTTACATCAAGCCAGAAATAAACATAGAAGTGGAAATTCAACCTTTCAATGAAGTTCCGATAGAGATAAAACCTGTAAAACCCGAAATCCTACCAGAAGTTGAAGTCTCTGTATCAAATAAATCTGAAGTCAAGTCTGAATTacctttaaataattttaatgataatgaAGCTATAGAACAGCAGTCATGCTCTAACAATTCAGTACCCAAGAGAATGATTGAAATCGAAGGAAAAGTGTATGAGAACGGTAAAATAAACAGATTGCAGTGTCCTCAGTGCGACAATACATTCAAAAACAGAGCTAATCTAAGGTCCCATATAAAATTCGTACATTCCACAGACGATGATGTTGTCGACTGTGATATTTGCTTCAGAACGTTCAAAACCCTCCTCCATTTATATTCCCATAAGAGTTCAGTTCATGCCGGCGAACAACAAGTCAATTGCGATTACTGCGAGAAAACATTTGTCAATAAAAAGAAGTTAAACAACCACATATTCTATTGCCATCCTGAAAAGGAAGAGGATGTCCACTGTGAAGTTTGCTCTAaagttttcaaatcaaaataccGTTTAAAAGTTCACATGAAGCAAGTCCATCCTGAGGGTCAGACGGTGAACTGCCCGGAGTGTTCAAAAGAGTTTAAGAATGCTATGCTGTTGCAGAGACATGTGAAATGGGCACATCCGGCCGATGGTCTGATTTATCGCTGTCAACAATGCAACAGGGTGTTACCATCGATAGATGGATATAGACGCCACATGAAAGCAGTCCATGGTGCCAAGAAAGTAGCCTGCGAGATATgcaacaaagttctaaagacgAATGGCAGTTTAAACCGACACATGACGACGGTCCACAGCACGGTGAAGGTACAGCGAAAAAAGTATAAAACTGGTGATCTCCAATGCAGCgagtgtgaaaaaaaattcgctACAAACACAGCACTGTTGTGGCATTATGAAAAGTTTCACTCGGAGAACAAACTGGAGACGTCATGCCATGCGTGTGCAAAAGAGTTCTGCGATACGAACAGCCTGAAAAGACATATGGAGACGGTACACTCTGAGCAGAGCGCGACTTGTGATATTTGCTTCAAAACGTATAAGTCTGCGATGAATTTGCAGAGGCATATAAGAATAACGCACGCACCACCTGAAGCAGCGAAGAAATGCGAAATTTGCGATAAAACCTTCAAATGCTCGATGCAtttgaaaatacataacaatGTTGTACATTCCAATCAGGGAGAATTCGCTTGTGATATTTGCAACAAAGTCTATTCATCCAAGAAATACATgttgaaacacaaaaaaacacacaacAGCAAAGTGTACCCGTGCGCAATGTGTCCAAAATTGTTCAAATCGACAAATGATGTGACGAGACACATAAGAAGGGTCCACATGAAAGGAGATCAAATGTTAGACCAAGATGATACAAGCCAAGATAACTCTGTTAATGAAGAAGAAATAATTTGTTCCAAATGTGGAACTGTTTTCAACGATGAAATGCAACTACACATTCATATAATCAACTGTGGAATTACAAAAGATAGTGAAAACGGTTTAAACACATGTATAAGCTGTGGACAGGTGTTTAACGATAGCTCAAAGTTTCAATATCACATAGCAACATGTAGACAAGTGAAAGTTGAACCATTGGACTACGATGAAAAAACTTGTACCAAATGTGGGGAGTTGTTTAAAAGCGATACAGAATTGCATTCCCATATTATAAGCTGCGGAAGTGATGTCGAACGGACtgatattaaaattgaaattgaagaGATAGATGATAACTCATGA
- Protein Sequence
- MDSNPEHIYIKPEINIEVEIQPFNEVPIEIKPVKPEILPEVEVSVSNKSEVKSELPLNNFNDNEAIEQQSCSNNSVPKRMIEIEGKVYENGKINRLQCPQCDNTFKNRANLRSHIKFVHSTDDDVVDCDICFRTFKTLLHLYSHKSSVHAGEQQVNCDYCEKTFVNKKKLNNHIFYCHPEKEEDVHCEVCSKVFKSKYRLKVHMKQVHPEGQTVNCPECSKEFKNAMLLQRHVKWAHPADGLIYRCQQCNRVLPSIDGYRRHMKAVHGAKKVACEICNKVLKTNGSLNRHMTTVHSTVKVQRKKYKTGDLQCSECEKKFATNTALLWHYEKFHSENKLETSCHACAKEFCDTNSLKRHMETVHSEQSATCDICFKTYKSAMNLQRHIRITHAPPEAAKKCEICDKTFKCSMHLKIHNNVVHSNQGEFACDICNKVYSSKKYMLKHKKTHNSKVYPCAMCPKLFKSTNDVTRHIRRVHMKGDQMLDQDDTSQDNSVNEEEIICSKCGTVFNDEMQLHIHIINCGITKDSENGLNTCISCGQVFNDSSKFQYHIATCRQVKVEPLDYDEKTCTKCGELFKSDTELHSHIISCGSDVERTDIKIEIEEIDDNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -