Pdes031747.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992871.1:6396303-6404131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 43 0.18 18 7.0 2.1 1 23 25 47 25 47 0.96 2 43 0.037 3.8 9.2 0.1 2 23 76 98 75 98 0.95 3 43 0.02 2 10.1 0.1 2 23 119 141 118 141 0.95 4 43 0.0028 0.29 12.7 1.4 2 23 147 169 146 169 0.95 5 43 7.3 7.5e+02 2.0 0.5 1 23 174 197 174 197 0.91 6 43 0.47 48 5.7 0.6 2 23 200 222 199 222 0.95 7 43 0.049 5 8.8 2.3 2 21 229 248 228 249 0.93 8 43 0.037 3.8 9.2 1.0 1 23 354 376 354 376 0.95 9 43 3.9 4e+02 2.8 1.1 2 23 406 428 405 428 0.91 10 43 0.0011 0.11 14.0 0.2 2 23 449 471 448 471 0.91 11 43 0.0015 0.16 13.6 0.6 1 23 476 499 476 499 0.98 12 43 0.51 52 5.6 0.1 3 23 575 596 573 596 0.95 13 43 0.00085 0.087 14.4 0.6 1 23 617 640 617 640 0.97 14 43 4.3 4.4e+02 2.7 0.0 3 20 648 665 647 667 0.92 15 43 0.093 9.6 7.9 2.3 1 23 771 793 771 793 0.91 16 43 0.12 12 7.6 0.6 2 23 821 843 820 843 0.96 17 43 0.66 68 5.3 2.9 2 23 864 886 863 886 0.94 18 43 0.14 15 7.3 1.5 2 23 892 914 891 914 0.92 19 43 0.025 2.6 9.7 2.3 1 23 918 941 918 941 0.92 20 43 0.54 55 5.5 1.0 3 23 945 966 943 966 0.95 21 43 0.0031 0.32 12.6 3.3 1 23 1041 1064 1041 1064 0.98 22 43 0.11 11 7.7 1.2 1 23 1137 1160 1137 1160 0.94 23 43 0.003 0.31 12.6 0.4 3 23 1167 1188 1166 1188 0.91 24 43 0.0015 0.15 13.6 1.0 1 22 1193 1214 1193 1216 0.90 25 43 0.0062 0.64 11.6 0.4 2 23 1222 1244 1222 1244 0.91 26 43 0.0044 0.45 12.1 3.9 1 23 1248 1271 1248 1271 0.97 27 43 0.00088 0.09 14.3 0.5 2 23 1278 1299 1277 1299 0.97 28 43 0.045 4.6 8.9 1.9 1 23 1305 1327 1305 1327 0.96 29 43 6.6e-05 0.0068 17.8 3.0 1 23 1368 1390 1368 1390 0.98 30 43 0.14 14 7.4 0.0 2 23 1418 1440 1417 1440 0.95 31 43 0.11 11 7.7 0.3 2 23 1461 1483 1460 1483 0.94 32 43 0.004 0.41 12.3 1.9 1 21 1488 1508 1488 1511 0.94 33 43 0.006 0.61 11.7 1.5 1 23 1516 1539 1516 1539 0.96 34 43 0.00097 0.1 14.2 0.7 2 23 1542 1564 1542 1564 0.97 35 43 0.0019 0.2 13.2 1.7 1 23 1643 1666 1643 1666 0.97 36 43 0.32 33 6.2 0.0 3 23 1695 1716 1694 1716 0.97 37 43 0.21 22 6.8 0.5 2 23 1739 1762 1738 1762 0.95 38 43 0.00015 0.015 16.8 0.2 3 23 1769 1790 1768 1790 0.94 39 43 0.0013 0.13 13.8 1.2 2 23 1795 1817 1795 1817 0.95 40 43 0.002 0.2 13.2 1.2 1 23 1822 1845 1822 1845 0.97 41 43 2.9e-05 0.003 18.9 6.3 1 23 1849 1872 1849 1872 0.97 42 43 0.0074 0.76 11.4 1.1 2 23 1879 1900 1878 1900 0.96 43 43 0.00041 0.042 15.4 1.5 1 23 1906 1928 1906 1928 0.98
Sequence Information
- Coding Sequence
- ATGCGCAGACGACGAAACCTACAGATTCTGTTCAACCACACGTCAGTTATACCTTTTAAGTGGCGCGGGAAGTATCTGTGCTTCTACTGTAGCAAAGACATGTCAGAATATTCGGAGCTCCGAAAGCACACGAAGTCGCACGGAGACTGTTCCATCGGAGACCATTCGCTGAAAGTCCTCAAAGGAGGTCAAAATATGGAAATCAAAATTGACGTTTCCGATATAACCTGCGAAATATGCAACGAACCATTTCCATCTTTTGACGAAATAATCAATCATTTAcatgttaaacacaaaatagacTACGATAAAGAAGTAGACATGGCTATCGAAGAATATAGACTTATAGATCTAACGTGTTTGGTGTGTGGCGAAAAATTCGCGTACTTTGGCTATCTAGTGTCTCACGTGAATAGTACGCATCcgaaaaagtgtcttatttgcGATAAATGCGAGCAGAAATTCAACAAACAGCGCGATCTGTTTTCGCACATCAAAAACTATCATCGAGAAGGTGGATACCAGTGTGAGGCTTGCCTTCAGAGCTTTGGCTCTCTCAATATACTACGCAAGCATAAAATCAACAGGCATTTGACTAGATGTACCATTTGCCATCTGAAGTTGCCATCGGCAGTATTAAAACAAAAGCATATGGAAATTGAGCATCCGGACGATGGTTCTCTTATTTGCCATAACTGCTCCAAGGAATTCCACACGAAACAAGGTCTAAGAATGCATGAAAGAAAATGCAAGAATGAAGATTTCTTTGACATCGAAATCAAAAAGGAAGAAGCGATGGACTACGACGATGGTTGCGAAGAAATAAAAAGACCAAGCGTCAAACAAATAAGagaaaatattGGAGCACTTCAGCCGGTAGTGAATTTCACCTTAGCCGTGCGCCATTGGAATGTAGATTCAAATCGTTTGGTGCGCAAGGGTGGTTTATCTAAGGATGACATACTACCGGACATCTTAACGAGAAAAGCTTGGCGCTCAAACAACTTCCAGATACTTTTCGATCACACGAGCGTGATACCGTTCAGATGGAAAAACTGTTTCATGTGTTTCTACTGTGGGAAACACACGAACGAATGGTCGGATATACGCGAACACACAGAGGCACACGGCGTTCTCGGAGCCGCCAAGATTGCGCAAGCCATATCAAAGTTGCGTTCGAAAGAAAAAGTCGTCAAAATAGACATATCCTACCTCAAATGCAAACTGTGCAACGTCCACTTCCTAGCGCTGGATGACTTAACACACCACCTGATTGAAGAACACaagttaaaatacaataaagaaGATTTCATGTTGATGCGCAAATACAATTTGTCGAAATCAAAATGTCCGGAATGCTCCGAAAGTTTCGTTTACTCGTCGTTCCTGATCAAACATGTGGACGAGACACACGAGTTGAACTGTTATTCGTGCGATCTGTGTTACAGTAGTTTCAACTCGCTGGAATATTTAGAAACGCATATCAAAACAGAGCACTGTAACCAAGAGATCGTCAATTTATTGAATGTGGTTGTGAATATGTCGAATGCGACTCCTTTAAactgttttcgcttcgacaccGGATTTCGGTGCTACTCCTGttcagatatttttaaaattatcggTGAACTTCGGACTCATCACACGACAGAACATAGTAAATTTTCAGCTCAATTAGTTTCTTATAGGATCGGTTTGACGTTGGACATCGCTGAGCTGGCTTGTCGCGAATGCTCAGAATCTGTTGACGATATTAAATCGTTGATCGATCATTTAAAATCCAAACACGATATCAGCATTTCGAATGACGTGCTAAAGGTCATTAAACAAGTTAATATAGACGATTCGTTCTCGTGTAGGATTTGTAATATTTCCTTTGATTCGTATGGTCTTTTATCACAGCATATAAATAAACAGCATGTGACCGACAATGATCTGCTTTGTTCCAATTGTGGATTGGGTTTTGCTTCTGGCGCAATTCTTACAAAACATATGACAcagtgtaataataaaaataaaaatgatgctTCAATAGAAGACACAGATGTTGTTGATGATGCTCAGAAGATTTACGAGAAGTGGCTAGAAAGAAGAGGTATTGATGTTGccgctaagaagaagaaactTGAAGAAAACAAAGAGAGACAACAAGAAAAGCCGAATGGGAACGTCAAACGTAGACGATGTGCGATTCTACGGAAACATGAAAATGGGCCGGCAAAGGCACTCAATGCGAGTAAAGTCAGGAGGACGAATCTGCAAATAATATTCAACAATACCACATTGATTCCTTTCAAATGGAGAGGGAAATATCTTTGTTTTTACTGCGGGAACGATTTTAACGATTGCAAAGAACTAAGGCAGCATACTGTTGAACATGGCGATTGTACTGACAAAGATCGAGctataaaattagtcaaatcgggtGACGTTGAAGTAAAATTAGACGTATCGGATATGACTTGTAAGCTTTGCAACAAGAATTTCTTCGTTTTCGACGATATTATAACCCACCTCAGTACAGAACACATGCTGCCTTACAACAAAGATGTCCCATTGTTTTTGACTACGTACCGTCTAGTTGATCTCAAATGTGTATTCTGTGATAGAAGTTACAACTTTTTCCATAAACTTGTCACTCACGTTAATCAATCGCATCCGGTAAACCATCTGCGATGTATCATTTGTAATCAGAACTTCAACAAGAAGAATGATCTCGACACCCATACGCGATCGCGTCATAGGTTAGAGTATTTTTGTAAGAAATGCCCTCAAACGTTTGATTCCAGCGCCGCTATGCATAAGCATAAAGCGAATTCCCACGGTTCACATTGCAATATTTGCTTTGAAGCATTCGCAACAGACAACAGCAGGGTAAATCACATCAAAAAGGTTCATTTCGACAATGATAATATCTTACAATGCGGCTTCTGTTTTCAAATGTTAACAACCAAAATTGCGTTTCTTAATCACGCTGCGAAATGCAACGTAAAAGATGTTGCTGATGACATTAAACCTAATACTGACGATAAGAAACCTACTGTAGTTCAAATTAGAAACAATATCACTTGCATTCTCAACATGTCAACTGCTATACCGTTTAAGTTTTACATGAACAACTTCAGATGCTTCTATTGTGTTAAAGATTTTAGCGAATGCGAGGATTTGAAAGAGCACACGCGAACTGAACATCCCGTGTGCGATGTCAAACTGAAATGTTTGcaacttaaaaatagaaaatctgGTATAAGAATAAAAGTTGACGTTTCAACCCTCGCATGTAAAGTTTGCTTTGAACCAATGCAAGATTTGGAACAATTGATAAATCACTTGATTTTAGAACACAAAGCGTCGTACAATAAATCAGTCGACCACTACTTTGAACCTTTTAAACTGATCAAAGACAGTTTTCCGTGCCCATATTGCGCTGAGATATACAGATACTTCTGTACTCTGTTAAAGCATATTAGCGAGAGCCACTCGGAGAACAGGGCTATCTGCCCTTTTTGCGGTGTCACGTTTAGAACGGAATCCAATTTGAGATTTCACATATCTTTAAGGCACAACACTATGAGTTACAAGTGTGGTGTTTGTGATTCTAGTTTCCCGACGAAACGACACCTTCGGGAACATTCAGGGTCTGCCCACGGAAGTAAAGTGGCCAAATGCTCGGAATGTTCGGAGAAATTCAAGTCCCCTTACGCAGTGCAGCGACATAAGATCGATGCGCACGGCATCGGCCATAAGTGCTCTTACTGCGGTAGACTTTTCACCAAGAAATCGTTCATGGTGGACCACGTAAGGCGATCACACCTCAAAGAGAAGAACGTGGAATGCCCCGTCTGCTTTCAAAGATTTTTCAACAAATACATGGTCACCAGACACATGATTATGCACGTTGGTGAAAGAAATTTCCACTGCGACATTTGTGGCAAAAAGTTCCTTTGGAAGAAGAATCTTATAGGGCACATCAAGAAACATTTCTTTTCAGATGAAAACGCTCCGGCTCCGTACGGAGGCTGCGCCTCTGAGCGCCGACGGAAAAACctcaaaataatattcaacaatACGACAATCATGCCTTTTAAATGGCGACGACGGTTTCAATGTTTCTACTGTCCTAAAAACTTTACCGAATATGATgagttaaaaaaacacactaaatCACATGGACCGTGCACCACTAAAGATAACTCTTTGAGAATTATTAAAGGTGGACACGTTGAAGTTAAAATCGACGTTTCAGATGTGACTTGCGAAATATGCAACGAGCCTTACGAAAATTGGCAAGAAATCGTTGACCATTTGATCATGAAACATAACATGGAGTATGATAAATCGGTTGATTTACCGCTCCAGGCGTACAGATTAGTCGACTTAAAATGCCTGCTTTGTGAGGAGAATTTCACTTATTTCGGATATTTGATCAGTCATGTCAATTTGAGTCACCCGCAAAACTGTTACATTTGCGACGATTGCGGTGTGACTTTTAACAAAAAGCGAGATTTGGCCGTACATTTCAGGTGTTACCATCGGAAAGGCGGCTACCCTTGCGATCAATGCCCTCTAATCTTTGAGAATTTCTGTTCTTTGCGTAGACACAGAAATAATGTGCACTATAGGAAATGTGCGAGCTGTAACCTGAAGTTTACAACGCTGGGTATGCTGAAGAGACATATTTTGACAGACCACCCTGCTACTGGAACACTGACGTGCGAGTACTGCGCCAAACTCTGCCAATCTACGCAAGGATTGCGACTCCATAAAAGTAAGTGCAGAGTCCGGATGCTTTGCACCAATGAAAACGTCGACTCCCTCGCTGTTCTAAACGAGCcgaaaaagaaacaaaacataaaacaaatcaGAGAAAACATACACTGCATCCTCAACATGTCTACAGCGATACCGTTCAAATTCTTCTCAAAATATTCTTGTTTTTACTGTTCAAAGAAATTCGTGGAGTTCGATGATCTCAAAAGTCACACTGAGACTGAACACCCGGTATGCGATTTGACAtctaaatctataaaaaaatgtcGAGGTGAAAgaattaatgttaaaataagtATAGCTACTCTGCTTTGTAAAGTTTGCGGCCAATCCATGGACGATTTAGATTTACTAGTGGACCATTTAATTACAGTACATAAAGCTAATTATGACAAATCGGTAGTGGGTTGTCTAGAGCCTTTTAGAATAGTCAAGGATAACATACCGTGCCCGCATTGCCCTGACCGTACTTTTAGGTATTTCGGGATCTTGCAGCGGCATCTGAACACTGATCACAgtaacaacaacaaaatctgCGATTATTGCGGTCGCGCTTTCAAAAAAGTTGCTAATCTTAAAGTTCACATATCCTACTCGCATTCCGGCAATGCGGAATGTAGCCTTTGCGGGATAAAGTTCAAGAACCAGTGGTGTCTCGCAAGGCACCGTGCCAAGGCCCACGATGTTAAAGATTACAAATGTTCAAAGTGTCCTGAGCTTTTTCGATCTCAGTATGAGAAGCAGAAGCATTTGATTCGAGCTCATGATATAGGGCACAAATGTGAGCATTGCGGGAAGATGTTTACGAGGAATTCGTTTATGAAAGACCATATACGGCGAACTCATTTGAAAGAAAAGAATGTTCCTTGCACTCTTTGCAGTGAACATTTCTTTGATAATTACCTTTTGAGAATGCATATGGTGAAACATGAGGGAGAGAGAAAGTTTTCTTGCAGCGCTTGTGGCAAAGCGTTTTTGAGGAGGAGCAATCTCCATTCTCACATGGAAATGCATAAGAAGTATGGCCATGCGATTGGTCTGTTGCaagatattatttaa
- Protein Sequence
- MRRRRNLQILFNHTSVIPFKWRGKYLCFYCSKDMSEYSELRKHTKSHGDCSIGDHSLKVLKGGQNMEIKIDVSDITCEICNEPFPSFDEIINHLHVKHKIDYDKEVDMAIEEYRLIDLTCLVCGEKFAYFGYLVSHVNSTHPKKCLICDKCEQKFNKQRDLFSHIKNYHREGGYQCEACLQSFGSLNILRKHKINRHLTRCTICHLKLPSAVLKQKHMEIEHPDDGSLICHNCSKEFHTKQGLRMHERKCKNEDFFDIEIKKEEAMDYDDGCEEIKRPSVKQIRENIGALQPVVNFTLAVRHWNVDSNRLVRKGGLSKDDILPDILTRKAWRSNNFQILFDHTSVIPFRWKNCFMCFYCGKHTNEWSDIREHTEAHGVLGAAKIAQAISKLRSKEKVVKIDISYLKCKLCNVHFLALDDLTHHLIEEHKLKYNKEDFMLMRKYNLSKSKCPECSESFVYSSFLIKHVDETHELNCYSCDLCYSSFNSLEYLETHIKTEHCNQEIVNLLNVVVNMSNATPLNCFRFDTGFRCYSCSDIFKIIGELRTHHTTEHSKFSAQLVSYRIGLTLDIAELACRECSESVDDIKSLIDHLKSKHDISISNDVLKVIKQVNIDDSFSCRICNISFDSYGLLSQHINKQHVTDNDLLCSNCGLGFASGAILTKHMTQCNNKNKNDASIEDTDVVDDAQKIYEKWLERRGIDVAAKKKKLEENKERQQEKPNGNVKRRRCAILRKHENGPAKALNASKVRRTNLQIIFNNTTLIPFKWRGKYLCFYCGNDFNDCKELRQHTVEHGDCTDKDRAIKLVKSGDVEVKLDVSDMTCKLCNKNFFVFDDIITHLSTEHMLPYNKDVPLFLTTYRLVDLKCVFCDRSYNFFHKLVTHVNQSHPVNHLRCIICNQNFNKKNDLDTHTRSRHRLEYFCKKCPQTFDSSAAMHKHKANSHGSHCNICFEAFATDNSRVNHIKKVHFDNDNILQCGFCFQMLTTKIAFLNHAAKCNVKDVADDIKPNTDDKKPTVVQIRNNITCILNMSTAIPFKFYMNNFRCFYCVKDFSECEDLKEHTRTEHPVCDVKLKCLQLKNRKSGIRIKVDVSTLACKVCFEPMQDLEQLINHLILEHKASYNKSVDHYFEPFKLIKDSFPCPYCAEIYRYFCTLLKHISESHSENRAICPFCGVTFRTESNLRFHISLRHNTMSYKCGVCDSSFPTKRHLREHSGSAHGSKVAKCSECSEKFKSPYAVQRHKIDAHGIGHKCSYCGRLFTKKSFMVDHVRRSHLKEKNVECPVCFQRFFNKYMVTRHMIMHVGERNFHCDICGKKFLWKKNLIGHIKKHFFSDENAPAPYGGCASERRRKNLKIIFNNTTIMPFKWRRRFQCFYCPKNFTEYDELKKHTKSHGPCTTKDNSLRIIKGGHVEVKIDVSDVTCEICNEPYENWQEIVDHLIMKHNMEYDKSVDLPLQAYRLVDLKCLLCEENFTYFGYLISHVNLSHPQNCYICDDCGVTFNKKRDLAVHFRCYHRKGGYPCDQCPLIFENFCSLRRHRNNVHYRKCASCNLKFTTLGMLKRHILTDHPATGTLTCEYCAKLCQSTQGLRLHKSKCRVRMLCTNENVDSLAVLNEPKKKQNIKQIRENIHCILNMSTAIPFKFFSKYSCFYCSKKFVEFDDLKSHTETEHPVCDLTSKSIKKCRGERINVKISIATLLCKVCGQSMDDLDLLVDHLITVHKANYDKSVVGCLEPFRIVKDNIPCPHCPDRTFRYFGILQRHLNTDHSNNNKICDYCGRAFKKVANLKVHISYSHSGNAECSLCGIKFKNQWCLARHRAKAHDVKDYKCSKCPELFRSQYEKQKHLIRAHDIGHKCEHCGKMFTRNSFMKDHIRRTHLKEKNVPCTLCSEHFFDNYLLRMHMVKHEGERKFSCSACGKAFLRRSNLHSHMEMHKKYGHAIGLLQDII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -