Pdes006659.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992848.1:2965864-2979147[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.007 0.72 11.5 2.3 2 23 43 65 42 65 0.94 2 25 0.0021 0.22 13.1 0.1 1 23 71 93 71 93 0.97 3 25 0.02 2.1 10.0 0.1 1 23 103 126 103 126 0.90 4 25 5.1e-07 5.2e-05 24.5 3.5 1 23 131 153 131 153 0.98 5 25 9.6e-06 0.00098 20.5 0.7 1 23 159 181 159 181 0.97 6 25 0.00017 0.017 16.6 4.9 1 23 187 209 187 209 0.98 7 25 1.7e-07 1.8e-05 26.0 0.5 1 23 215 237 215 237 0.98 8 25 0.0036 0.37 12.4 2.6 1 23 243 265 243 265 0.97 9 25 6e-05 0.0061 18.0 0.9 1 22 271 292 271 292 0.94 10 25 0.00013 0.013 16.9 0.5 1 23 299 321 299 321 0.98 11 25 1.2e-05 0.0012 20.2 0.1 1 21 327 347 327 348 0.95 12 25 0.031 3.2 9.4 0.0 5 23 402 420 401 420 0.96 13 25 1.2e-05 0.0012 20.2 0.1 1 21 426 446 426 447 0.95 14 25 0.021 2.2 10.0 0.0 4 23 483 502 483 502 0.96 15 25 1.2e-05 0.0012 20.2 0.1 1 21 508 528 508 529 0.95 16 25 0.031 3.2 9.4 0.0 5 23 583 601 582 601 0.96 17 25 1.2e-05 0.0012 20.2 0.1 1 21 607 627 607 628 0.95 18 25 0.031 3.2 9.4 0.0 5 23 682 700 681 700 0.96 19 25 2.6e-05 0.0027 19.1 0.1 1 20 706 725 706 727 0.94 20 25 0.031 3.2 9.4 0.0 5 23 753 771 752 771 0.96 21 25 1.2e-05 0.0012 20.2 0.1 1 21 777 797 777 798 0.95 22 25 0.031 3.2 9.4 0.0 5 23 852 870 851 870 0.96 23 25 1.2e-05 0.0012 20.2 0.1 1 21 876 896 876 897 0.95 24 25 0.021 2.2 10.0 0.0 4 23 933 952 933 952 0.96 25 25 1.2e-05 0.0012 20.2 0.1 1 21 958 978 958 979 0.95
Sequence Information
- Coding Sequence
- ATGCGAAAACTGCTCACCGGGATATGcttagaaattattattattctcataTTGTCTACAGTAACTGAAGTGCCTGATAATAATGAAGCGGACGCGGACAAGACGAAAAAAGGCAAGGCGAAGCTCAAGTGCCCGCACTGCGACAAGCTGTTCAGCAGCAAGCAGAGCAAGTCGTTGCACATTAAGGCGACTCACAACGGCGAGCGTCCATACACTTGCGCGGAGTGCGGCGCCAAGTTCGCGTACCCGCGCTCGCTGTCGCTGCACGCGATCAAGcaccgccgcgcgcgcgcgcacccgCCCGCCTACGCCTGCGACCTCTGCGGGAAGGTCCTAAACCACCCGTCATCGGTGATATACCACAAGGAGGCCGAGCACGCGGGCATGTGCTACGTGTGCAGCAAATGCGGGAAGTCGTTCAAGCACAAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACCGCCCCTTCAACTGCAAGGTGTGCAACGCGTCGTTCAAGACGAAAGCGAACCTGATCAACCACCAGCTGCTGCACTCCGGCGTGAAGAAGTTCTCGTGCGAGATCTGCAAGCACAAGTTCGCGCACAAGACCAGTCTCACGCTGCACATGAGATGGCATACCGGCTCCAAGCCTTACTCATGCAGCGAGTGCGGCAAATCCTTCAGCCAGAAGGGCAACCTATCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTACGCGTGCGCGACGTGCGGGCGCCGCTTCACGACGTCGTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCCCGAGCGCCCGCACGCCTGCCACCTGTGCGGGAAGCGCTTCGCATCCCGCGGCTCGTACCTGGCGCACATGCGGCGCGAGGCGGGCACGCGGCCGCACCGCTGCAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGGTAACTAGCGGCCCTACCGCTGCAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGGTAACTAGCGGCCCTACCGCTGCAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGGTAACTAGCGGCCCTACCGCTGCAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGGTAACTAGCGGCCCTACCGCTGCAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAACAAGGTAACTAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGGTAACTAGCGGCCCTACCGCTGCAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAACAAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGGTAACTAGCGGCCCTACCGCTGCAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGGTAACTAGCGGCCCTACCGCTGCAGCGTCTGCCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCGGAAGCACGCCCGCAGCCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCCCAAGGGCTTTTGCGGACCCTTCCAACCTTAGCAAGCACAAGAAGGACTCCCAACGTCCTGAAAAGGATACGGCTTTCTCTGGGGAAAacccggagcggggactacccatcCAGGAGGTGGCATGGGTGCCGGCCTTCAAGTCCACTCTTGCGCACTCGCCAAGTCTTCTCTCAACAGTCGGAGCAAGGCTTCGTGCGCTTCGCCCCGCACCGCGCTCATCCGAAGCCGGGCGCtcgtctcgggccctcttctcTGCCGTCCAATGGTAGACGCAGCGAGCCAGTCCAGCTGCGGCGCGCCCTACTGTGCGGTACGCCGTCGCTACTCGAAGTGCTATGCATTAGCTAtatcaatatcaaaagatatagccAGCACCCCATCCCCTGTCTCCGCTGCCTGCGCGCACCGCACATTAGGGCTGAAACCTGCAGTCCGCTATTTTACGGTCGGCCTGATCTTTGTGATGGCACAGTAGCGTTCTGTCGTCCAATGAGCCCCGATGTAGGTCACAGCACCGGGGCTCGCTTCGGGGGTCCCGAAGGTCCTGAAGCACCGCATCGACTTGCTTTGACCAGGGCAGAGCTGAGGCTTAGAGGCTCTTGGCTCAGCAGACTCTTGGGCTCTTCTAGCCCAAGAGTCTTTcaaGTACACAAACAGATCAGCCTgctcgcgcccgcgcccgccgcggccCCGGCCCCGGCCCCGGCTGCGGGCGCGGGGCGAGTCATCTACGTGGCGTACGACGTGGACGACGACGAACCCGCCTACACCATCATCGACTCGGAGCAGGTGAGCTGCGTTACTGGTCCAGCAAGCAACTGa
- Protein Sequence
- MRKLLTGICLEIIIILILSTVTEVPDNNEADADKTKKGKAKLKCPHCDKLFSSKQSKSLHIKATHNGERPYTCAECGAKFAYPRSLSLHAIKHRRARAHPPAYACDLCGKVLNHPSSVIYHKEAEHAGMCYVCSKCGKSFKHKQLLQRHQLVHSQHRPFNCKVCNASFKTKANLINHQLLHSGVKKFSCEICKHKFAHKTSLTLHMRWHTGSKPYSCSECGKSFSQKGNLSEHERIHTGEKPYACATCGRRFTTSSQHRLHARRHAPERPHACHLCGKRFASRGSYLAHMRREAGTRPHRCSVCPRAFAERWALRKHARSHTGERPYRCTVCPRAFADPSNLSKHKKVTSGPTAAASARAPSPSAGRCGSTPAATRASGPTAAPCAQGLLRTLPTLASTRSVCPRAFAERWALRKHARSHTGERPYRCTVCPRAFADPSNLSKHKKVTSGPTAAASARAPSPSAGRCGSTPAATRASGPTAAPVCPRAFAERWALRKHARSHTGERPYRCTVCPRAFADPSNLSKHKKVTSGPTAAASARAPSPSAGRCGSTPAATRASGPTAAPCAQGLLRTLPTLASTRSVCPRAFAERWALRKHARSHTGERPYRCTVCPRAFADPSNLSKHKKVTSGPTAAASARAPSPSAGRCGSTPAATRASGPTAAPCAQGLLRTLPTLASTRSVCPRAFAERWALRKHARSHTGERPYRCTVCPRAFADPSNLSKHNKVTSGPTAAPCAQGLLRTLPTLASTRSVCPRAFAERWALRKHARSHTGERPYRCTVCPRAFADPSNLSKHKKVTSGPTAAASARAPSPSAGRCGSTPAATRASGPTAAPCAQGLLRTLPTLASTTSVCPRAFAERWALRKHARSHTGERPYRCTVCPRAFADPSNLSKHKKVTSGPTAAASARAPSPSAGRCGSTPAATRASGPTAAPVCPRAFAERWALRKHARSHTGERPYRCTVCPRAFADPSNLSKHKKVTSGPTAAASARAPSPSAGRCGSTPAATRASGPTAAPCAQGLLRTLPTLASTRRTPNVLKRIRLSLGKTRSGDYPSRRWHGCRPSSPLLRTRQVFSQQSEQGFVRFAPHRAHPKPGARLGPSSLPSNGRRSEPVQLRRALLCGTPSLLEVLCISYINIKRYSQHPIPCLRCLRAPHIRAETCSPLFYGRPDLCDGTVAFCRPMSPDVGHSTGARFGGPEGPEAPHRLALTRAELRLRGSWLSRLLGSSSPRVFQVHKQISLLAPAPAAAPAPAPAAGAGRVIYVAYDVDDDEPAYTIIDSEQVSCVTGPASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -