Pdes027521.2
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992866.1:9575292-9575915[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-06 0.00066 20.4 0.0 4 36 15 48 12 54 0.89 2 2 3.8 1.1e+03 0.5 0.1 17 25 106 114 103 114 0.88
Sequence Information
- Coding Sequence
- ATGGATGACCCAAacaagaaaaacagaaaatattccgAGTACGATCTAAAAACCGCTGTCGAAAATGTATTAAGTTCTACAATGACGATTTACAGAGCTTCTAAAGAGTTTAAGATTCCATGGTCGACGTTGAAAGAGAATGTGACAAAGTACAAATCTCTACGAGAGAACAATCAAGACGCACAGATCATAATGTCGAAGATAGGAAGGCCGTTTGCGTTACCAGTTGAAATAGAACAAAAGTTAGTGGCCTACATTATTGAGATGCAAGAACGTGGTTTTGGTTTGACAGTAAGCAAAATAAAGCAAGTTGCATTGTCCTTAGCAAAAGCTGCCAATATAAGCTGCCCATTCAATGAAGAAAAGGGAGCTGGTTGGAATTGGTGGGTGAAGTTTAAGGAACGGTACGGGTTGTCTTTGCGAACACCAGAAAATCTTTCAGCAGGCAGAGCAATTTGCTCAAATCCGGTTGTTTtggaagatttttatgaaaaattagaACAACAATTAATTGAACATGATATTCCACCCGAAAGAATATGGAATTGCGATGAAACTGGTCTGATGTTCGTCAACAAACCCAACAAAATTGTGACTAgcgttggaaaaaaaatatgtttataa
- Protein Sequence
- MDDPNKKNRKYSEYDLKTAVENVLSSTMTIYRASKEFKIPWSTLKENVTKYKSLRENNQDAQIIMSKIGRPFALPVEIEQKLVAYIIEMQERGFGLTVSKIKQVALSLAKAANISCPFNEEKGAGWNWWVKFKERYGLSLRTPENLSAGRAICSNPVVLEDFYEKLEQQLIEHDIPPERIWNCDETGLMFVNKPNKIVTSVGKKICL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -