Pdes021135.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pyrausta despicata
Gene Symbol
clz9
Assembly
GCA_963921415.1
Location
OY992860.1:9979636-9982545[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.1e-08 2.3e-05 25.1 0.0 3 40 16 54 14 56 0.91

Sequence Information

Coding Sequence
ATGCCTCGGACATACGTAAGAAAAACAGTCCAAAAATATCGTAAAGAGGATTTAGAAAATGCTATTAAAGAAGTGGAACAGCAGGGATCATCCATTAACGCCGCGgctaataaatataacataccTACAACAACGCTTTTCGACAAGGTAAAAAAAACTCACAGCTTAAAAATAGGTAGGCCGCAAGCGATTGCTATCGAATATGAGAAGCAATTGGCTGAAGGACTTCGGGCCATGGAAAAATGGGGCTTCGGGCTGTCTAGAAATGAAACATTAGAACTTGTTGCCGATTTtgtcgaaaaaaataatttggaaacgccatttacaaataataaacctGGCCCGGACtggtttattaattttaaaacaagacACCGTCTTTCACTTAAAAAACCTCAACCAGTCGAATTTGCTCGAAGGAAAATGACGGACCCTTTCGTCATTTATGGGTACTTCGAAATGCTAAAAAACACCTTGGCTGAATTGGACTTATTTGAACGGCCAGCAGCACTATGGAACCTTGATGAAACTTCATTATGCCTGGACCCCACTAAAACAAAAGTGGTCGGCGCAAGAAATAAGGCTTGCTCGAGGACCACTTTTGGTAGTGGCAAAGAAAATATAACCGTTTTAGCGGCTGCTAGTGCTTCGGGCCAAAAAATTTCACCCTTAATAATTTTCAAAGGCAAGAATGTATGGAACCAGTGGATGGCCCCCACAGAAGATTACGATTTTGAGCTTGCTTATGCAGCAAGTAGTAAAGGATGGATGGAGGGGCcaatttttctaaattatttagaaaacattttatttcccGGTCTAGGAGAAGAACGACCTATATTGTTAGTTTTTGATGGCCACTCAACCCATGTCACGTTAGATGTAATCGAGTTGGCCATTCGCCATGGAATAACAATTTTGAAGCTGCCTCCTCACACATCGCACTTATTACAGCCCTTAGATGTGGCTGTGTTTAAGTCTTTTAAATGCAAATGGGATGCCAAATTGGTGGCGTGGCAGCGCCACAACGTCGGGCAAAAAatgccaaaaaacattttttcgcaGACCTTAGCTAGCACTTGGCATGAAACAAGCGCCGACGTAATCAAGAGCGGCTTCAGAAAAACCGGAATCTATCCATTTAATCCTCATGTGATCTCGGAAGATAAATTTGACCCATTAGCCTTAAAACGatacaaagaaaaacaatgCACAAAAGAGCTTCAAAATCCACAACCCttgaaaaaaatgtgtgttGACGTTTTGACTAAAATTCTTCATCTCGCAAACTCTGCCGTTGATTCAGAAGAAAAAAGTTCTCAAAAGCAACAAGGAGCTGATTCTGAGTCTGCCAAAGACCAGATTACTTTAAACCAACAAGAGATTGCTTCTAGTGTTGCCTTTGCTTCTGAAGAACAAGGAACTGAATACCAACAAGATATTGATTCTAGTCCCGCCTTTGCTTTTGAAGAACAAGGAACTGAAAACCAACAAGATGCTGTTTCTGTTTTTGCCCTTGCTTCGGATGAAAAAGATACTGCAAATGAACGAGAGTTTGAGTCTGGATCAAAAAATGATCCTTTTCTTATAACAAATCTTTCCAGAAATGACAACCAGAACATAAAATTCGTGGCACATGATACTGCAAGTTTACCGAAATGCCTTAAAATGAAACCTAAAAAGGAAAGTCCTAAAGTCACAATCATCTCCGATATAAAGGTCAGCTTTGAGGAACTGttgctaaataaaatgagacAAGATAAAAAGGACTATGATTTTCCAACAAAGAGAAAGCGGGTGGCTACAGGTGCCGAAGTTATTACTAAAACCAAACTCGCAGAAAAAGAGAAGCTTATAGTAGACAGTACTTCCAAAAAATCTGAACGTAAAGGTGAAAACAAACCAAGGAAATCAATTTTGaaggaaaaagaaaacataGATTGCAATGAGCCTGGCCCTTcggacataaaaaaaaacaataaaataaaaaggcaacgtaaaaagaaaataaaacaaagagaTGTAGATTCAAGTGACTCTTTAACTAATATTTCTGATACAATGAGTATTTATAGCGACATAGATGTTGAGCAATATTGCGATTCTGAAACACTTGGAGCTAACGATTACTGCTGGGATAATTTTGATGTAGAAATGGTAAATCCCGAAAACAAATGCAAAAATAAAGGCATcggtaaaaaaacaaaaaacacaaaagatACTAGCAAGACTGATGGTACTGACTTTAATTCACTTAAAAATGTTCTGGTAGAAAATAATGGGACTGaatatgtaacaaaaaattTTGATGTAAGAGAAATTGAAAATATGTCTTATGGAAACGAAACAAGGATAAACAAAGATCTAGAAAAAAGTTGTCAAAAGAAGAATTTCAGGAAGAAAGACAAAATTACTGGTGCTGTGATCTGCTCAAAGGTAACCAAGAAaagaattgaaaataaattgccaAACGTaaaaggaaagaaaaaaaaaggtaacaaAAAGAAACATGACAGTTCGTCTTCTGACAACACAGACGTTGAAATTCAGTACCACGAAAGTGATGAAAGTGATTACAATGTTCAGTTAGATAAGTCTGATTTGGATGAAAGGGATACAAAATCGAAGGCTGAAAATAGAGAAGGGTTAAAAAATGGACTTTTTGTAATTGTAACCTATGAAGGGGAATATTTTCCGGGACGAATTGAAAATACGGATAGAGGACGATGTGAAATTAGTACTATGGCATTATCTGCCGGAAACAGTTTCAAATGGCCTGAGAGACCAGACAAAATATGGTATCCAAACCGTGATATCAAAGAAATAATAAACCCTCCGATTCAACAAAATAATAGAGGGTTTTTCAAAGTTAAAGAGATGGAGAAGTATTTGCCacacatttatttatag
Protein Sequence
MPRTYVRKTVQKYRKEDLENAIKEVEQQGSSINAAANKYNIPTTTLFDKVKKTHSLKIGRPQAIAIEYEKQLAEGLRAMEKWGFGLSRNETLELVADFVEKNNLETPFTNNKPGPDWFINFKTRHRLSLKKPQPVEFARRKMTDPFVIYGYFEMLKNTLAELDLFERPAALWNLDETSLCLDPTKTKVVGARNKACSRTTFGSGKENITVLAAASASGQKISPLIIFKGKNVWNQWMAPTEDYDFELAYAASSKGWMEGPIFLNYLENILFPGLGEERPILLVFDGHSTHVTLDVIELAIRHGITILKLPPHTSHLLQPLDVAVFKSFKCKWDAKLVAWQRHNVGQKMPKNIFSQTLASTWHETSADVIKSGFRKTGIYPFNPHVISEDKFDPLALKRYKEKQCTKELQNPQPLKKMCVDVLTKILHLANSAVDSEEKSSQKQQGADSESAKDQITLNQQEIASSVAFASEEQGTEYQQDIDSSPAFAFEEQGTENQQDAVSVFALASDEKDTANEREFESGSKNDPFLITNLSRNDNQNIKFVAHDTASLPKCLKMKPKKESPKVTIISDIKVSFEELLLNKMRQDKKDYDFPTKRKRVATGAEVITKTKLAEKEKLIVDSTSKKSERKGENKPRKSILKEKENIDCNEPGPSDIKKNNKIKRQRKKKIKQRDVDSSDSLTNISDTMSIYSDIDVEQYCDSETLGANDYCWDNFDVEMVNPENKCKNKGIGKKTKNTKDTSKTDGTDFNSLKNVLVENNGTEYVTKNFDVREIENMSYGNETRINKDLEKSCQKKNFRKKDKITGAVICSKVTKKRIENKLPNVKGKKKKGNKKKHDSSSSDNTDVEIQYHESDESDYNVQLDKSDLDERDTKSKAENREGLKNGLFVIVTYEGEYFPGRIENTDRGRCEISTMALSAGNSFKWPERPDKIWYPNRDIKEIINPPIQQNNRGFFKVKEMEKYLPHIYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-