Pdes000872.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992844.1:7495882-7496563[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-09 8.9e-07 29.6 0.1 3 42 16 56 14 59 0.90
Sequence Information
- Coding Sequence
- ATGGTACGGAactataaaagaaaaacagctgACTCTTACGATTACGAAACATTAATGAAAGCTGTAAATGAGGTCAAAGCTGGTAAACTTAACGCATATGAAGCGGCAAGAAAATACGGAATTCCCCGCACTACTATTGCTGATAgagcaaaaaataaaagaggAGTTGTGAAAAATAATCGAGGCCCACCAACTACATTAAATAGAGAATTTGAGCTTAGACTCGCCAATGGCTTGCGGGTAATGGAAAAATATGGTTTTGGTCTTACATCTAAAGAAACATTAGATTTGccAATGCAATGGGTGAAAAGTTGCCTCCACTAA
- Protein Sequence
- MVRNYKRKTADSYDYETLMKAVNEVKAGKLNAYEAARKYGIPRTTIADRAKNKRGVVKNNRGPPTTLNREFELRLANGLRVMEKYGFGLTSKETLDLPMQWVKSCLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358507;
- 90% Identity
- -
- 80% Identity
- -