Pdes012290.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992852.1:13414900-13416289[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-11 1.8e-08 35.0 0.0 4 37 15 48 12 55 0.92 2 2 7.7 2.2e+03 -0.5 0.0 7 13 115 121 114 123 0.85
Sequence Information
- Coding Sequence
- ATGGAGCCGAAAAATAAGCGTAGAAGAACATGGGACCAAAACAAAATGATTGAAGCAATAAAAGCGCTAAGAAATAAGACAATGGGTCTTAAGAAAGCGGAGAAAGAGTTCGATGTACCGAGATCAACTTTGAGAAGATTTGTGCACAGCAGCCTCACACCAGAGAATGCTGTAGAGAAATGTTTGGATTTTAAGCTAATCAAGTTGCTTTCTGGGGGATACATGCTGCAAAATGGCAGATTCACTTTCTCCACAAACTACTTGAACGAAAACGGCAGGTGTTCTTGGTATTGCTCGAAGCGGATCAGCAAGAAATGCCCAGTTCGCGTGAAGATGAATAACAAGGCAATCGAGGCGGTATTAGGGCACCATACTCACGATTAA
- Protein Sequence
- MEPKNKRRRTWDQNKMIEAIKALRNKTMGLKKAEKEFDVPRSTLRRFVHSSLTPENAVEKCLDFKLIKLLSGGYMLQNGRFTFSTNYLNENGRCSWYCSKRISKKCPVRVKMNNKAIEAVLGHHTHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -