Paur027223.2
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757277.1:8423228-8427607[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.55 47 5.5 0.1 1 23 216 238 216 238 0.97 2 12 5.1e-05 0.0044 18.2 3.5 1 23 244 267 244 267 0.97 3 12 6 5.2e+02 2.3 1.0 1 9 279 287 279 301 0.67 4 12 0.0001 0.0087 17.3 2.6 1 23 556 578 556 578 0.98 5 12 0.0055 0.48 11.8 2.9 2 23 584 606 583 606 0.96 6 12 0.00021 0.018 16.3 2.6 2 21 615 634 614 636 0.93 7 12 0.0073 0.63 11.4 0.9 3 23 641 661 640 661 0.98 8 12 0.064 5.5 8.5 1.4 2 23 674 696 673 696 0.96 9 12 0.00015 0.013 16.7 3.3 1 23 702 724 702 724 0.98 10 12 3.4 2.9e+02 3.1 3.2 2 23 731 752 731 752 0.97 11 12 0.00028 0.024 15.9 2.1 1 23 758 781 758 781 0.98 12 12 0.00075 0.065 14.6 3.0 1 23 785 808 785 808 0.97
Sequence Information
- Coding Sequence
- atggaCCCAACTGATATCGCCAGCTTATTTAGTTCTGAAAAAGATGATTGTATGAAAAATAAGCCAAGAATACTGAATTTTGCATACGACACTGCCAGCCGTGCAAGAAATATCAGTGTAGATAAGAAACAAGGAGTTAAAGCAGAATGTCTCACAACTAAGGATGCTGTGAAATATCTTTTAGAAGGAAGGCTCAGAAAGAAAGTCTGTCGGTATTGCTTGAACGTGGCGTCTCCTCTGTCTGAACTCGATCAAGTTATGCAGGTGGCTGGGTCTGGAAAGCTTTTTAAAGTTACTATTCGAGACATGGTAGCTAGTTTCTACCCCTAtaagGTGGAAGATGATCCAAACTTTCCAAACAAAATTTGTAACCAATGCTTAAATCAGACGATCAGATCTTATTTGTTTACACAGCAGTGTGAAAGGTCCGGAAGAGCGCTGCAAAATTGTTTCGATGATATGTACAACaaattagataaattggacCCCCTAGAACCTCAAAAGAAAAGAGGCAGacagaaaataaatttgaaCCAAAATGTCTTGTATGCAAATTATGAAAAAGTTATTGATTATGCCGACCCGTTGATAAACATAGTGAATAGCGCTACAGAGCTGACTGAATCAGTTAGTGATGAAAGTAAATTTGAATGTCTAAAATGTTGGCAGATATTACCCAGTATGGAGTCCTTACTTAACCATGAAAAACAGCATCCGAAATCCATGTGGTATAATTGCCGGCAATGCGGCAAATCATTCACGAAGCGTCACCTTATAAAAAAGCATTTGAGAATTGCTCATGATCCGTTGAAAATTGTGTTGCCAAAGACTGATTTTAAATGCACTGACTGTGGTGATGTAAGTGAAAAATACAACAATCACTTACAGCATGTTGAAAAGCATAAGTTTCAAATGGTGATGGAGCACCTAATAGAAAGAAATATGGATAAGTTGTGTGCTGTGTGTCTGGATAATAATGGGAAGCTATCAGATTTAGAAGAATTGATATGTCTTCATGGAGGCTTTCCAGAGATGACGGGTGAAAAATCTCTGTACAGTATTATAGGCTCTACTGTACCTGatATGTATAGCCTACATGACTTCACGGGAACAAAAATATGCGAAAAATGTCTTAACCATGCTATAACTTCGTATGTTTTCATACACCAAACTCTTTACGTTAGACAACGACTTCAAACATGCATAAGCTTAATGTTAAATAACTTAAACGTAGCCCTGAAACCAGACACTAACATTTTTATCGAAATTTCCCAAAATACCATCTTGCCACTAGTAGAACCAAACTTTGATGAGAATATACTCCTTAAACCAGAGGAAGTTGATGAATCGAAACTCAAAATAGATGTTCTAGAAGATGAATTCAGACAAGATTCAGAAAGTGAAGAAGATTCTCATGTTTCTGAtgaaaaagataaaacaaaatttaatcacGAAATAGATGATGATATTGGGTCTACATTTATAGATGACCAAATAAGCATAAATCTTGCGAAGAAAGCAGTGAAAACGTACGAAAAAAGGAAAAAGGTAAATGGAGTGAATGAAAATAGTAAATACAACACATTCAATGATGTTTGCAGTGAATTTTTAACATTTAAGAAAAGGAAAAAACCTGTAATTCGGAAAAAACCGTATAATTGCAAGTTCACCTGCCCAATTTGTAATAAGCATTTCATATCCGGATATTTCTTGAAGAGGCATGTTTTGAAACacgtttttaaaaaggttgaatGTCGCCATTGCGAAATGCAGTTTAAATCCAAATACTACCTGTATGAGCACACGAAAATGTATCATCTACTGAATAGATATAACTTCCTTTCTTGCAAGATCTGTGGCAGGACTTTTGAAAGCAGCAACAAATTGGAGCGTCATCTAAATTGTCATGGGACCAAAGATTGTCCCTTGTGTGACAAGAAATTCTTGACTCAAAACTATTATGATAGCCACATGCAACGTCATGGTACACAGCTGCAACTAACGCAGAAGCCTGCTCAGACGTGCAGTTTTTGTGAAAAGGAGTGCTCTAATGACAATGAACTCTCGGTCCACGTCAATAAAGTTCATTTGCAGATAAAGCCGTACAGTTGTGACATGTGTGAAAGACATTTTTACACCGAATCAAATCTGAGCAACCACAAAAAAGTCCACAGTCTGAAGTCTAAGGAAACTTGTGAGTTTTGCcgcaaaattttaaaatgcaGGAAGGATTTAGTAGTTCATGTCAGAAAGCATATAGGAGTTCAGCCATATTCCTGTCTTGTGTGTTCACAATCGTTTTATTCGAGTTCAAAGGCCACGAAACACATGAAGACTACGCATGGTGGTAGATTCTGCTGTAAGCTTTGCAAAACTGTACTGACGACCAAATATGAACTTAAAGAACACATAAATAGGGTTCATAATATGATTTAG
- Protein Sequence
- MDPTDIASLFSSEKDDCMKNKPRILNFAYDTASRARNISVDKKQGVKAECLTTKDAVKYLLEGRLRKKVCRYCLNVASPLSELDQVMQVAGSGKLFKVTIRDMVASFYPYKVEDDPNFPNKICNQCLNQTIRSYLFTQQCERSGRALQNCFDDMYNKLDKLDPLEPQKKRGRQKINLNQNVLYANYEKVIDYADPLINIVNSATELTESVSDESKFECLKCWQILPSMESLLNHEKQHPKSMWYNCRQCGKSFTKRHLIKKHLRIAHDPLKIVLPKTDFKCTDCGDVSEKYNNHLQHVEKHKFQMVMEHLIERNMDKLCAVCLDNNGKLSDLEELICLHGGFPEMTGEKSLYSIIGSTVPDMYSLHDFTGTKICEKCLNHAITSYVFIHQTLYVRQRLQTCISLMLNNLNVALKPDTNIFIEISQNTILPLVEPNFDENILLKPEEVDESKLKIDVLEDEFRQDSESEEDSHVSDEKDKTKFNHEIDDDIGSTFIDDQISINLAKKAVKTYEKRKKVNGVNENSKYNTFNDVCSEFLTFKKRKKPVIRKKPYNCKFTCPICNKHFISGYFLKRHVLKHVFKKVECRHCEMQFKSKYYLYEHTKMYHLLNRYNFLSCKICGRTFESSNKLERHLNCHGTKDCPLCDKKFLTQNYYDSHMQRHGTQLQLTQKPAQTCSFCEKECSNDNELSVHVNKVHLQIKPYSCDMCERHFYTESNLSNHKKVHSLKSKETCEFCRKILKCRKDLVVHVRKHIGVQPYSCLVCSQSFYSSSKATKHMKTTHGGRFCCKLCKTVLTTKYELKEHINRVHNMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01282754;
- 90% Identity
- -
- 80% Identity
- -