Paur028891.1
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757281.1:4834425-4852523[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-05 0.0016 19.6 0.2 2 23 285 306 284 306 0.97 2 12 0.0012 0.1 13.9 1.1 1 23 444 466 444 466 0.98 3 12 0.022 1.9 9.9 9.3 1 23 473 495 473 496 0.94 4 12 0.11 9.4 7.7 1.3 1 23 500 522 500 522 0.97 5 12 4.7 4.1e+02 2.6 1.3 1 23 527 550 527 550 0.82 6 12 0.017 1.5 10.3 0.3 1 23 554 577 554 577 0.92 7 12 0.0021 0.18 13.2 0.4 3 21 591 609 590 614 0.93 8 12 1.8 1.5e+02 3.9 0.4 2 23 666 688 665 688 0.94 9 12 0.011 0.95 10.9 1.1 2 20 704 722 703 725 0.89 10 12 0.00011 0.0093 17.2 0.5 1 23 731 753 731 753 0.98 11 12 0.00048 0.042 15.1 3.7 1 23 760 782 760 782 0.96 12 12 4.4e-05 0.0038 18.4 1.3 1 23 788 811 788 811 0.95
Sequence Information
- Coding Sequence
- ATGCGCTGCTGTGTGCCTGGTTGTAAGAATGACTCTAGACACATTTCGAAGTCCGAAGGGATCACATTTCATGTGTTTCCCAGCGAGCCAACTCTTCAAGCGTCATGGCTACAGGCAGTTGGTAAAGAGACATGGAAACCGCAAAAAAGGAGTGCGGTTTGCTCGGAACATTTCCTGTGCGATGATCTGTACGAAACAAAGAACGGGATGAGGAAAGTCAGGGCGGGAGCGGTACCGCTTGTTCTACAGGATTCTGGTAATTGTGACTACGGTGAACCAGCTTCATTAAAGGTGTGCCGTATATGTCTTGCTACAGATCACAAACTGTACCCAATAAGGAAGTATAAACTGGATCAAGCGTATGAACAGCTCACCGGATCTACAGTGAGTGCAGAGGACAAACTACCCCAGAAGTTATGTTACGAATGTGCTCAGAGGTTGGTAAACTGCTCTCGCTTCAGAACGAAGAGTTTGAGAGCGTTGAATCTCATGATGGAGGTTGTGAAGAAACAGGAGCATctcACAATACAGAACTTGAAATCAATAAACAGAACTAACAACCAACTTACATCTATTCTGACAccaaaatactttaaaacgGATCACTATGACTATATTATAGAAGAACAAACaactaaaaatgaaataaatatatcatcAGCCAACAATGAAGTGTTTATTGAAGAATTTGACTCGATAATCGATACAGAAGACAATCGTAATGGAATCGATTACTCGTCAGACGACTCTTTGCCTCTAGGAGTtagtaaaagaaagaaagagaagATGAAACAGAGTTCTAAAAGAGTGAGAAAGAAATCTAGTAAGGAAACTGAGAACGGTGAAGATATGAAATGTGTGGAGTGTGGCAAGAATTTTGTTGATCAAGAGGAATATTTTTCGCATATGGCAACACATAATGACtttttaaatgaaaatcaaatgcCGAATGAAACCAACAATTTTGATATTGGCgatgctgaaataaaaacatctaaagAGACACAAGAAATCAATTCAAACGCAGACGAAAAAGTTAAATACGAATTCGAAGTCAAAATAGAAGACCAAATGGACGACGAATATGTTGCCACAGAAAGAGATTACACATCAGACGATAGCATAGAAgtgaaaaagagaaaaaaagagtcgaaaaaagtaaagaaaacaCAGAAAAAGAATTCAGAACCAAAAATAGATAGACGGAGAAAACCGTTCTTGAGTGATGATTTGAACGAGACATTGTTTAATATAACTGATTTGACATTTGAGGAGCAAGTAGCGGATATAGAGAAAAGACAAGAGAGTTCTAATTATAAAAATGCAGTGTTCAAGTGTACGGAGTGTTTTAAAGGTTTTTTGGATCAGGACGCTTATAATTCACATATGCTCAGGCATACGGAGGAATGCGGGGAACATCGCTGCGCTGTATGCAAGACCCACTTCAAACACCCTCACGCTTTGCGGAAGCATATCACTGCTCATCATACACAAAGGTTCAGCTGTAAGCAATGCCCGTACGTGACGGCGCATAGACAATCGGCTCGTCTTCATGAGAGATGGCATAAGGGCACGAAGTATTCGTGTCCACACTGCCCTGACGAGTTCCTAAAATTCACAACATACATGGGCCACATCCGCATAAAGCACCCATCGGACTTTGTGTGTCAGCTCTGCGGGTACTCTTTCGTCAGCGAGAAGGGCATCGCTCTGCATAAAAAACTGAAGCATCGACAGGAGAATATGCCGATACCAGAAGACGGCCCCCACTGCGAGCTGTGCAACATTCGTTTTATAGACTCCGAAGCCTTGAAGAAACATATCAGCGTATCTGCGAGACATAATTCCGTTGATAAAGattcgCGAGTACCCAACAAGCCTATGTACACAGCGAAGAAAGAtaacagagagagagagaagagAGCCAGGGAGAGGAGGGAGAGAGAAGACGATAGCATGTACCCGAGTCAGCTGAGGAAGGCTGAGGGGCCTATACCTTGTGagcagtGTGGCCTCCAATTAGAAGACTCCCGCGCATACCACGGCCACTTCAGGCGCATGCACCCCGACAAGAATCGAACCAACTACCCGTCGATGAAGTCGCCCTGCATGTGCGAGGTGTGCGGGAGGATGTTCCAGAGCTACGCCCTCCTGAAGGACCACCGCTGGACGCACACGGGCGAGCGGCCGTTCAAGTGCGAGGCGTGCGGGAAGGCCTTCCGCATGAAGCAGCGCCTCGTCGCGCACCGCCGCGTGCACAGCGCGCCGCGCGCCGCCTACGCCTGCGCCGCCTGCGGGAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCATATGTTTATACACACAGGATTGAAGCCATTCAAATGCGAGATGTGCGGAAAAGGGTTCAAGCACGCGAGCGAGAAACGAGCGCACATCACGTACGTACACCTCAAGAAACCCTGGCCCAAGCGCAGCCGCGGCAAGCGACGCGACAGCCGGCAGgCACCAATGCAGCCCCCGACCGATATGCCGACGCCGGATATGAGCATGCAGCCTATATGGCCAGCTTGCGACCCGAAAATGGCTCACATGCAAGAGAAACCGCCTTACTATGctgttaaaatgtaa
- Protein Sequence
- MRCCVPGCKNDSRHISKSEGITFHVFPSEPTLQASWLQAVGKETWKPQKRSAVCSEHFLCDDLYETKNGMRKVRAGAVPLVLQDSGNCDYGEPASLKVCRICLATDHKLYPIRKYKLDQAYEQLTGSTVSAEDKLPQKLCYECAQRLVNCSRFRTKSLRALNLMMEVVKKQEHLTIQNLKSINRTNNQLTSILTPKYFKTDHYDYIIEEQTTKNEINISSANNEVFIEEFDSIIDTEDNRNGIDYSSDDSLPLGVSKRKKEKMKQSSKRVRKKSSKETENGEDMKCVECGKNFVDQEEYFSHMATHNDFLNENQMPNETNNFDIGDAEIKTSKETQEINSNADEKVKYEFEVKIEDQMDDEYVATERDYTSDDSIEVKKRKKESKKVKKTQKKNSEPKIDRRRKPFLSDDLNETLFNITDLTFEEQVADIEKRQESSNYKNAVFKCTECFKGFLDQDAYNSHMLRHTEECGEHRCAVCKTHFKHPHALRKHITAHHTQRFSCKQCPYVTAHRQSARLHERWHKGTKYSCPHCPDEFLKFTTYMGHIRIKHPSDFVCQLCGYSFVSEKGIALHKKLKHRQENMPIPEDGPHCELCNIRFIDSEALKKHISVSARHNSVDKDSRVPNKPMYTAKKDNREREKRARERREREDDSMYPSQLRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWTHTGERPFKCEACGKAFRMKQRLVAHRRVHSAPRAAYACAACGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRSRGKRRDSRQAPMQPPTDMPTPDMSMQPIWPACDPKMAHMQEKPPYYAVKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279317; iTF_01282710; iTF_01282375;
- 90% Identity
- iTF_01282710;
- 80% Identity
- iTF_01279317;