Paur027220.2
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757277.1:8406338-8409454[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.5 3.8e+02 2.7 0.8 1 21 299 319 299 320 0.93 2 19 0.00052 0.045 15.1 0.5 1 23 331 353 331 353 0.99 3 19 2 1.7e+02 3.8 0.7 2 23 357 378 356 378 0.91 4 19 0.014 1.2 10.5 2.2 3 23 385 406 384 406 0.96 5 19 0.0035 0.3 12.4 0.7 2 23 461 483 460 483 0.96 6 19 0.027 2.4 9.6 2.2 1 23 489 512 489 512 0.96 7 19 0.0053 0.46 11.9 0.5 2 21 517 536 516 537 0.92 8 19 0.0023 0.2 13.0 1.0 1 23 545 568 545 568 0.97 9 19 0.48 41 5.7 2.9 1 23 573 596 573 596 0.96 10 19 0.0024 0.21 13.0 1.6 3 23 610 630 609 630 0.99 11 19 0.00017 0.014 16.6 0.6 2 23 637 658 636 658 0.97 12 19 2.8 2.4e+02 3.3 1.0 2 12 664 674 663 677 0.85 13 19 0.018 1.5 10.2 1.0 2 23 703 723 702 723 0.97 14 19 6.4 5.5e+02 2.2 1.2 3 23 729 749 728 749 0.88 15 19 4.2e-05 0.0036 18.5 0.7 1 23 761 784 761 784 0.97 16 19 0.00068 0.059 14.7 4.5 1 23 790 812 790 812 0.99 17 19 5.3e-05 0.0046 18.2 3.7 2 20 819 837 818 840 0.90 18 19 0.00011 0.0099 17.1 1.9 1 23 846 869 846 869 0.93 19 19 0.044 3.8 9.0 0.3 2 23 875 897 874 897 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAACAATTATTTCATCGGGAACTGCTCTAGAAGACAGACAAGCCATTGACACCATGCATAGTTTGAAACAAAAAGTTACCACAATATGTCAGGCAACACAATTCTGTGCTGTATGCCTAGACACTAATGGTAAAATGTGGCCTGTCCATACAGAGTTCAATATTGTTGTTGATAAATTCAGCCACAAAAAGCTTTTGATTGATATTTTGGATTACATTCTTAATAATGAGGCTGACCAGATTCTTGCAAGCTCCTACCTGTGTAGTCACTGTATTGAGAAATCAATCCAAGCATACTTATTTATATACAATGCtagaaaactatcaaaaattaTTGATCAATCTGTGTTTGATTTATACTCCAAGACGGTCGATGTCAAAACTCAGTTGCAGACATTTCAAGACCATCAATCTGCAAAAGTTTTTATTCTCTTAGAACAACATGAAGCAAATCAATATGTAGACATTAGCAAAAAAACTTGGATTGCAGCTGTAAAAACATTGGATGAAGGTATGCGTGAATCAGGCAACAAAATCTTGAAAGCTGatgatattaaaattgaaaGTATTCAGTCCAATTACAGAGAAGGTTTCAGTATAACAGAAAAAGATGGTACCAAACCAAACTCTAACATACAGTTAGAGGCTAAACAGGAGACTTCAAGTGTAAGAGTGAAGAACATGCAAAGTCTATGTGGAGATGTATGTAATAATGATGAACAGTTTGAATGTGTATATTTAGAATCAGATTATGATAGTGATGCAGTCAATGAAGAAGTTACATATTTAGATGAAGATTGTCTTTTGTCAGACATTGAGATAAAGGAGAATTCACAAACAAGTAATGAAATCTCAAAACCgaaaaaaaagagaaaactgATTTATACATACAACTGTCGTAATTGTGAAGAGGTGTTGCCATCTCGCAGAAAGTATTATGAGCACAGGAAAAAATGTACAGCAGTGAATGTTGATCCCACTGAATTCAAATGTAAAGTTTGTGCCAAAATTTTCGGCACTCAAAATGCTTTGGGCTCTCATTACAGGTCTCATTCTAAGATTAAGTGTAAAGTCTGTAACTTTATTGTCTCTAGGGATGATTTGCATGAACATGTACAACTAAATCATGAGGAGTTTACAAAATTCTGTACATCATGCAGCTACTTCTGCTCCACTGCTGACCAACTGAAGGCACACATAGAAAAAAACCATAAGGGTCCTAAATGTGCTCTATGCTTAAAAAGTGTCAATGAAAATGATTTGAAAATGCACAGATGCAAATTCAGCTGTTCAGATTGTGTAGAAAATATCTGCATTCATTTTAGATATCTCATTTCATTCAAGAAACAATTCCTGAAGAAAATGACCAAAATAAAATGCCTTGACTGTGACTATGTCTGTACAAATAAAAAGGCATTGCTTGGGCATGTCAATAGGGATCATTTGGACCATCATCCATTTACCTGTGATCATTGCCAACAGCAATTTTATTCTCGTACTGCTGTAGGAAAACACATCTCAATTTTTCATCAAGACAGGCTGATTTGTGAGTTCTGTGATCATGAGTTTTCTTCCACAAAGAATTTAGAAGCTCATAAAAAGCTTTGTGAGACTATCCAGAAAGACTTCAAATGTGATAGGTGCAAAAGCTCATTTGCTACACAACAGGAATTGGATAATCATGTTAAAATAAGACATAACAAAGGAGGGTTCGAGTGTGAATTGTGTAAGAAAAAGTTATTAACCAAAGAGAAACTGCACGACCATATGTTTAAAGTGCATAGTGGAGTCCAGGTTAGGAGAACTGTGTCACATCCACTTTGTCCAATATGCAATATGAAATGTGGAAATAAGCAGCTATTGCTTCAGCATATAAAGACACATGGACCGAATGCTAGGTTACCTTGCAAAAAATGTGATGAAACTTTTGATGGCTTGAGAAAATTGAATACCCACATACGGTCACATAATGAGGGTGTGATTGAATGCACAAGCTGCAAGAAAGTATTCTCGAAAACGTATTACCCCCACCACACTGTTTATTGCACTGCTGGGCGTGAATCGCGTCCATCGCGTAAACTAAAAATTATAGGTTTGATTACATGTGATATCTGTGATAAATTGTTTACTGCTACTCAGTACAGATACCATAAGCAAACTCATTTAGATAAAGCACCATGCCCGATATGCAAGAAGCTACTTAAGCCATGTTATATGAGAGTGCATATCAGATTCTCACACAAGAAGTCTACCAAGCAAAGGCATCCAAAAAAATTTGAATGTGAATATTGTGCCAAACGATTCTCCAACACCAAAGATTTGGAAAACCATGTCAACAAGATCCATTTGAAAATCAAGCCATATCAATGTGAATACTGTAAGAAAATGTTTTGCGGGAAAGAGCGTTTATCTCAGCACCTGACCACCCATTCAACGGCCACTGCCTGTTATTGTAGTATATGTAACAAGAAATTCACTAACAAGGTTACTCTAAAACGCCATATGCCGATGCACACTGGTGTTAAACCGTATCCTTGTGACGTATGCGGAGAGAGTTTTAGAACTTCAACCCATATGAACACTCATAAAGTTAAGAAGCATTCCGAGAGAACAGTGCCTTGTCCACTTTGTGAAAGGATGTTCTTTTTGGCGAGGGAAATGAGAACTCACTTCAGAAAAGTTCATTGGAAACGTAAAGATAAGAAATTTGACCCGAGAGATGTTAAAGAATTAAATCCGGCATTCTATCACCTGTTTGAAGATGGAAGAGTAGTCAAAGTTGCTGGCGAAGGATTGTGTCTTGCTTCGGGTCCTACTAATGAGaaatttgaaatttaa
- Protein Sequence
- MDETIISSGTALEDRQAIDTMHSLKQKVTTICQATQFCAVCLDTNGKMWPVHTEFNIVVDKFSHKKLLIDILDYILNNEADQILASSYLCSHCIEKSIQAYLFIYNARKLSKIIDQSVFDLYSKTVDVKTQLQTFQDHQSAKVFILLEQHEANQYVDISKKTWIAAVKTLDEGMRESGNKILKADDIKIESIQSNYREGFSITEKDGTKPNSNIQLEAKQETSSVRVKNMQSLCGDVCNNDEQFECVYLESDYDSDAVNEEVTYLDEDCLLSDIEIKENSQTSNEISKPKKKRKLIYTYNCRNCEEVLPSRRKYYEHRKKCTAVNVDPTEFKCKVCAKIFGTQNALGSHYRSHSKIKCKVCNFIVSRDDLHEHVQLNHEEFTKFCTSCSYFCSTADQLKAHIEKNHKGPKCALCLKSVNENDLKMHRCKFSCSDCVENICIHFRYLISFKKQFLKKMTKIKCLDCDYVCTNKKALLGHVNRDHLDHHPFTCDHCQQQFYSRTAVGKHISIFHQDRLICEFCDHEFSSTKNLEAHKKLCETIQKDFKCDRCKSSFATQQELDNHVKIRHNKGGFECELCKKKLLTKEKLHDHMFKVHSGVQVRRTVSHPLCPICNMKCGNKQLLLQHIKTHGPNARLPCKKCDETFDGLRKLNTHIRSHNEGVIECTSCKKVFSKTYYPHHTVYCTAGRESRPSRKLKIIGLITCDICDKLFTATQYRYHKQTHLDKAPCPICKKLLKPCYMRVHIRFSHKKSTKQRHPKKFECEYCAKRFSNTKDLENHVNKIHLKIKPYQCEYCKKMFCGKERLSQHLTTHSTATACYCSICNKKFTNKVTLKRHMPMHTGVKPYPCDVCGESFRTSTHMNTHKVKKHSERTVPCPLCERMFFLAREMRTHFRKVHWKRKDKKFDPRDVKELNPAFYHLFEDGRVVKVAGEGLCLASGPTNEKFEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01282712;
- 90% Identity
- -
- 80% Identity
- -