Paur029251.1
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757282.1:2872243-2875919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.054 4.6 8.7 0.3 2 21 186 205 185 208 0.88 2 9 0.015 1.3 10.4 1.6 1 15 217 231 217 237 0.86 3 9 0.00072 0.062 14.6 0.4 1 23 247 269 247 269 0.98 4 9 0.00063 0.054 14.8 1.7 1 23 282 304 282 304 0.97 5 9 3.9e-06 0.00033 21.7 1.5 2 23 310 331 309 331 0.96 6 9 3.5e-06 0.0003 21.9 2.8 1 23 337 359 337 359 0.99 7 9 2.8e-05 0.0024 19.0 1.3 1 23 365 387 365 387 0.97 8 9 0.00031 0.027 15.8 0.2 1 23 394 417 394 417 0.95 9 9 0.00021 0.018 16.3 1.4 1 23 423 446 423 446 0.94
Sequence Information
- Coding Sequence
- atGACAGCTCCCTGTGTATTAGATAGTGATATATCCGCTCCTAGTGCTTTGGACAATGATTTATACACTTACGAGTACTTCTTGCAAGACGATGTTTGTCGATTTTGCTGGAGCAAGGATGCTGAATACGAAATCTTCGCGAATCGTCCACAAAAAGAGCAATTACTCAAGAATGCGTTGTTGGACAAGATAAGGGAATGCCTAGACTTGGATTTGAAGGAAGGTACCTCACCGTATAAAGCATGTATAAGTTGTTACACAAAAATAGAAGAGTTCTACACTttcaaacaaatttgtaaagAAACGGATAGACGACTGCAAGATATATTTTCGAAATACACGAAAGCTTTTAACGATACTACAATAGTCAACGTTAAAATCGAGAAAGATGATGCCGACTTATCCGATCTAGAAACTAAAGCGGAATGGATAATTTTTGATAATGCGCCCGAATCAGATGACGACAGTGAAACTCTTTCGGAAATCAAATTGAAACGAAAAAAAGCTGCCAACAAAACTAAAAAGAGGTCGTACAAAAAGCTCCGGACACCTACATATTGTAATATTTGCAGACTAGATCTGAAAACTCAAGAAAATTTGGAGTCTCACAATGACCAGGCACACGGTATCGAGAAGGAGAGTGGTTTGTTTAAATGTTTTGGTTGTGATAAACGGTTTAAGCATCGAAAAACAAGACTGGGGCATGAAATTTCTGTGTGTCAGGGCTTAAAAGATGGTTATAAGTGTCCAAAGTGTGAGCGGTACCTACCAAAGCGTGGGATGTATGAAGCACACATGAGGGATCACCGGAGACAGAAAAATGTTGAGCTACCGGAGGATATATTCCGATGTTTCAAGTGTTTGATGCTTTTTAAGACAAAGGCAAACTTAAAAGAGCATATGGCTCAGCATGAGCAAAAGAAATGTGTTTGTGAGACCTGTGGCAGGGTATTCTCCCGTAGCGCATATCTGAATCTCCACAAGCGTATCCACACAGGTTCTAAGCGGTATACCTGTGAAATATGTGGCTACAAGTGTGCGCAACGTTCCTCTTATAATGTTCATATGAgAAAGCACACAGGCGAGCGTCCATTCGCATGCGACTTGTGTCCGCTTCGCTGCGTCTCAAGTTCGAATCTCCGAGCGCATCGCCGCCGACACCTCGGCACTCACCCGCAATACGAGTGCTCAATTTGCAACAAAAAGTTCGGTTACAAACTCAGCCTTGAAGAACACGTGGCAATCACGCACGAACGTTCCCAATCTTTTCGCTGCACCGAGTGTGGCGCTAGTTACTGCAGAGTGCGCGGGCTACGGCGCCATCTGTTGGCCAAACACGGGAAACAACTGAAATACGCGCGGGATAAAGGAAATGATGTTGAGGATTTGTATATAGAAAAGGGAATGGAAAATGAAAAAGATAAAGAGAGTGAGATTAGTTTGACTAGTGATGTGTTGGATAAGATgtattaa
- Protein Sequence
- MTAPCVLDSDISAPSALDNDLYTYEYFLQDDVCRFCWSKDAEYEIFANRPQKEQLLKNALLDKIRECLDLDLKEGTSPYKACISCYTKIEEFYTFKQICKETDRRLQDIFSKYTKAFNDTTIVNVKIEKDDADLSDLETKAEWIIFDNAPESDDDSETLSEIKLKRKKAANKTKKRSYKKLRTPTYCNICRLDLKTQENLESHNDQAHGIEKESGLFKCFGCDKRFKHRKTRLGHEISVCQGLKDGYKCPKCERYLPKRGMYEAHMRDHRRQKNVELPEDIFRCFKCLMLFKTKANLKEHMAQHEQKKCVCETCGRVFSRSAYLNLHKRIHTGSKRYTCEICGYKCAQRSSYNVHMRKHTGERPFACDLCPLRCVSSSNLRAHRRRHLGTHPQYECSICNKKFGYKLSLEEHVAITHERSQSFRCTECGASYCRVRGLRRHLLAKHGKQLKYARDKGNDVEDLYIEKGMENEKDKESEISLTSDVLDKMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281582;
- 90% Identity
- iTF_01282661;
- 80% Identity
- -