Paur001324.1
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- CAUZXH010000308.1:45294-48329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.8 5e+02 2.3 0.0 6 20 186 200 185 202 0.94 2 13 0.055 4.7 8.7 0.1 2 23 219 239 218 239 0.95 3 13 4e-05 0.0034 18.6 1.8 1 20 247 266 247 268 0.95 4 13 0.0016 0.14 13.5 1.5 2 23 305 326 304 326 0.96 5 13 0.00019 0.016 16.4 4.0 1 23 338 360 338 360 0.98 6 13 0.00068 0.058 14.7 2.1 1 23 368 391 368 391 0.93 7 13 2.3e-06 0.0002 22.5 4.4 1 23 415 437 415 437 0.98 8 13 2.3e-07 2e-05 25.6 0.9 1 23 443 465 443 465 0.96 9 13 6.6e-06 0.00057 21.0 0.3 1 23 471 493 471 493 0.99 10 13 7.1e-07 6.1e-05 24.1 0.7 1 23 499 521 499 521 0.98 11 13 2.6e-05 0.0022 19.2 0.5 1 23 527 549 527 549 0.98 12 13 3.6e-05 0.0031 18.7 2.1 1 21 555 575 555 577 0.96 13 13 2e-06 0.00017 22.6 0.2 1 23 583 605 583 605 0.97
Sequence Information
- Coding Sequence
- ATGGATCCTGCAACAAACGTTAACCTACATAAAATCTGCAGGACTTGCCTGCTGGAATCCCCGCACATGGTCTCATTAGCGACCAAAATGGAGGGTAACAACCGCAGCCTGTACGACGTGTTGCTTTTTGTTCTCAATAACAATATAGCTGTGGGCGACAAGTTCCCAAATCAAATTTGCGGTGATTGCGAGATGTTGCTGTATCGTATCGAAGAGTTCAAGAGGCGCTGCGACCAGTCTGAAAGTATTTTAAAGGAGATTGTTGGTGCTAGCCAGTCAGGTCCTTCACAGCTTGTAAAGCTCGAATCTAATACGACAACAAATGAGAAACAAACATTTGATCACTTCCTAGAGTTAAACCCAGTCAGTATGCTTGATTCTATCAAAGAAGACGCGATAGCAATCGAATTTAACCCTGTTAAAAAAGAATCGAAAGTTGGAGTGAAGGAATCTATAAAAGAAGAGTTTTCCGACTTCTCTGATGATATGGATGATAGCAATTATGCAGATAACTCTGCAAATATGTCAGAAAGTAAATACCTGTACAACTGTCCATGTGGTGAAGGATTTTCAGAGTTAAAAGAATACGAGACTCATCTGGATAGTAATGTATGTTCAAAAACCGTTAAAAACAATCTTTTGTTATTGCCAGTAAAATGTGCGCAATGTGGTTTGGTATTCAAATCTGATGAAATTAGGGAACATGTTAAGTCTCATTTGAAACCGAATGCCAAATTCTATCAATGTTTATTGTGTAAAAGAAAATTCTCTAAAAAATCTAATCTACAAACTCATTTAGATAAAAAAGTATGCTCCAATTCTAAAAAGAAATCAAAttgtacagaaaaaaaaatatcaaagcgTAAAGATGATCAAAAACCTAAAGATGATTTATTACCGATTTTGCCAGTAAAGTGTGAACCATGCAACATGGtttttaaaaacatgaaaacatTCAAAACTCATATGCAAACTCATAAAAGTCCTGAATTTTTAAGAACACCAGAATTCTTCCAGTGCTCTCAATGTATGAGAAAGTTTAAAAAGAAATCATCACTAATCACACATATGAAAAATCATGAACAAAAAGATGGTATAAAGTTTGTATGCACAATTTGTAAACGGGAGTTCAAATATCAGGCCCATCTGGATAACCACAATCAAAACgaacataataaacaaaaatctcACATTCAGATGGAAATTTATCCGATTGATGCAAGTAATTCCAATGAGAAAAAACACCAATGCAAGCTTTGTAGTAAATCGTTTAATATGCAGTCAACATTAACGGATCATATGAGAACTCATACCGGAGAGAAGCCATATCTGTGTTCGATTTGTGGAAAAGGGTTTACGCAGAAGACAAATCTGGGACAGCATATGAGAAGACATTTAGGATTGAAGCCTTTTAAATGTACTGAATGTGAAAGAGGGTTTGTTTCCAAAGGTGAACTAGATGCACATCTCCGCAAACATTCCGGGGATCATCCGTTTGTCTGTGACGAGTGCGGCAACGGGTTCACAACATCAAGCTCATTGAGAAAACATAAGAGGGTGCATACGGGAGAGCGGCCATATGCCTGTGATCTGTGCCCGATGAAATTTTCAGTATCAGgtACTCTAAAAAGCCACCGTCGCACGCACACAGGCGAAAAGCCCTACCAATGTTCGTACTGTGAAAAGGCCTTCGTACAACGCCAAGACCTGATCTCCCACATCCGTTGCCATACGGGAGAGCGACCCTTTGCTTGTACTCAGTGTGGCCAGGCCTTCAGGAAACCTTCCGCGCTTAAGGCCCACGCGAAAACGCATCGGGGGCCCCCGGGCCTTTTGCCGGGACCTGCAGGGGCTTTGGGGCCCGGGTAG
- Protein Sequence
- MDPATNVNLHKICRTCLLESPHMVSLATKMEGNNRSLYDVLLFVLNNNIAVGDKFPNQICGDCEMLLYRIEEFKRRCDQSESILKEIVGASQSGPSQLVKLESNTTTNEKQTFDHFLELNPVSMLDSIKEDAIAIEFNPVKKESKVGVKESIKEEFSDFSDDMDDSNYADNSANMSESKYLYNCPCGEGFSELKEYETHLDSNVCSKTVKNNLLLLPVKCAQCGLVFKSDEIREHVKSHLKPNAKFYQCLLCKRKFSKKSNLQTHLDKKVCSNSKKKSNCTEKKISKRKDDQKPKDDLLPILPVKCEPCNMVFKNMKTFKTHMQTHKSPEFLRTPEFFQCSQCMRKFKKKSSLITHMKNHEQKDGIKFVCTICKREFKYQAHLDNHNQNEHNKQKSHIQMEIYPIDASNSNEKKHQCKLCSKSFNMQSTLTDHMRTHTGEKPYLCSICGKGFTQKTNLGQHMRRHLGLKPFKCTECERGFVSKGELDAHLRKHSGDHPFVCDECGNGFTTSSSLRKHKRVHTGERPYACDLCPMKFSVSGTLKSHRRTHTGEKPYQCSYCEKAFVQRQDLISHIRCHTGERPFACTQCGQAFRKPSALKAHAKTHRGPPGLLPGPAGALGPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281539;
- 90% Identity
- iTF_01279507;
- 80% Identity
- -