Paur029374.1
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757282.1:3990486-3993282[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00059 0.051 14.9 2.2 1 23 4 27 4 27 0.97 2 24 0.061 5.3 8.5 1.8 1 23 100 123 100 123 0.94 3 24 0.0021 0.18 13.2 1.2 3 23 130 151 129 151 0.91 4 24 0.028 2.4 9.6 1.8 1 22 156 177 156 179 0.86 5 24 0.0028 0.24 12.8 0.4 2 23 185 207 185 207 0.91 6 24 0.0002 0.017 16.3 4.2 1 23 211 234 211 234 0.97 7 24 0.0013 0.12 13.8 0.5 2 23 241 262 240 262 0.96 8 24 0.02 1.7 10.1 1.9 1 23 268 290 268 290 0.96 9 24 0.00089 0.077 14.3 2.2 1 23 331 353 331 353 0.98 10 24 0.028 2.4 9.6 0.0 2 23 381 403 380 403 0.95 11 24 0.0012 0.1 14.0 0.7 2 23 424 445 423 446 0.95 12 24 5.5e-05 0.0047 18.1 0.5 1 23 451 474 451 474 0.97 13 24 0.19 17 7.0 0.4 1 23 479 503 479 503 0.94 14 24 0.0002 0.017 16.4 1.2 2 23 506 528 506 528 0.96 15 24 3.5 3e+02 3.0 2.0 2 20 535 553 534 555 0.90 16 24 0.0023 0.2 13.0 1.8 1 23 608 631 608 631 0.95 17 24 0.45 39 5.8 0.0 3 23 660 681 659 681 0.93 18 24 0.0003 0.026 15.8 0.7 2 23 704 727 703 727 0.96 19 24 1.2e-05 0.001 20.3 0.5 3 23 734 755 733 755 0.94 20 24 0.00018 0.015 16.5 1.2 2 23 760 782 759 782 0.95 21 24 0.0019 0.16 13.3 2.1 1 23 787 810 787 810 0.97 22 24 1.3e-05 0.0011 20.1 6.3 1 23 814 837 814 837 0.97 23 24 0.00047 0.041 15.2 0.4 2 23 844 865 843 865 0.96 24 24 0.00048 0.042 15.2 1.8 1 23 871 893 871 893 0.98
Sequence Information
- Coding Sequence
- ATGAACAACTTTAGGTGCTTCTATTGTGTCAAAGACTTTAGCGATTGCGATGATTTGAAGGAACACACGGCCACGGAACATCCGGTATGTGATGTGAAACTCAAATGTTTGAGGCTTAAAAACAGACAATCGGGTATAAGAGTAAAAGTTGATATCTCTACGCTGTCGTGTAAGGTCTGTTATCAGCCCATGCAAGACCTGGAATATTTGATAGACCACTTGATAGCAGAACACAAGGCTTCGTACGATAAAACAGTAGATCATCACCTCGACCCCTTTAAACTGATCAAAGACAATTTCCCGTGTCCATTTTGCACTGAAATCTACACATATTTCTGTACTCTTCTGAAGCATATAAGCGAGAGCCACAGTGAGAATAGAGCTATTTGTCCGTACTGCGGTGTCACGTTTAGAACGGATTCCAATTTGAGGTTCCATATTTCTCACAGGCACAACACTGGTAGTCACAAGTGCATTGTTTGTGACTTGAGTTTCCCAACGAAACGACATCTTCGGGAGCATTCCGGTTCTGCCCACGGACGTAAAGTGGCCAAATGCTCGGAATGTTCGGAGAAATTCAAGTCTCCATACGCTGTACAGAGGCACAAAATCGACGTGCATGGCATAGGACACAAGTGTACCTACTGTGGTAGAATGTTCACTAAGAAATCCTTCATGGTGGACCACGTCAGGCGGTCGCATCTCAAAGAAAAGAACGTGGAGTGCCCCGTGTGCTTCCAGAGATTCTTCAACAAGTACATGGTCAACAAACACATGGTTATGCACGTCGGAGAAAGGAATTTCCATTGCGATATTTGCGGAAAAAagtttctctggaagaagaatCTTATCGGACACATCAAGAAACATTTCTTTTCAGATGAAAACGCTCCGGCTCCTTACGAAGGGTGCGCCTCTGAGCGTCGGCGGAAAAACTTAAAAGTACTATTCAACAACACAACGATTATACCCTTTAAGTGGCGACGCCGCTTTCAGTGCTTCTACTGTCCCGAATACTACACGGAATATGATGAGTTAAAAAAGCATACCAAATCCCACGGGCCGTGTAGCACAAAAGATTACGCGTTGAAATCGATTAAGGGTAGTCACGTTGAAATCAAAATAGATGTTTCAGATTTAACATGCGAAATATGCAATGAACCTTTCGGAGATAGCCAGGAGATTATCGACCATTTGATCATGAAACACAAATTGGATTTTGATAAGTCAGTGGATATACCCCTACAGGCTTATAGATTGGCCGACATGAAATGCTTGTTGTGCGGAGAAAGTTTCACATTTTTCGGATATTTAATCAGCCATGTGAATGTACATCATCCGCAAAATTGCTACATATGCGATGACTGTGGATTGACGTTCAACAAGAAACGAGATTTAGGAGTACATTATAGATCTTATCATCGAAAAGGCGGTTACCCTTGTGAAAAGTGCCCACCACTTGTCTTTGACAACATCTGCTCATTGCGTAGACATCAAGATAACGTTCATTATAGGAAATGTTCTAGTTGTAACCAAAAGTTTACAACGCTGGGTTTGCTGAAGAGACATATACTGTCGGAACATCCGGATAGTAGCAGTTTAACATGCAAGCACTGCGCCAAAGTCTGCCAATCTGTGCAAGGATTGCAACTACACAAAAGCAAATGTAGGGTCACAATGCTCTCCAACAACGAAAGCGTAGACGCCACTTTTTCTGGCAATACCGAGCCCCAAAAAAAGCAAAACACACAACAGATCAGAGAAAACATACGCTGCGTCCTTAACATGTCCACGGCTGTACCTTTtaaattcttttcaaaattctcCTGCTTTTACTGTTCTAAGAAATTTGTAGAATTCGATGATCTCAAAACCCATACAGAGTCCGAGCACCCGGTATGCGATATGAAATGTAAACCGATGAAAAAATGCCGCGGTGAAAGGACCTGTGTTAAAATAAGTATAGCGTCTTTGTTATGTAAACTTTGTGGCTTACCTACGGATAATTTGGAACTCCTAATAGACCATTTGATCGCCGAGCACAAAGCCAATTACGATAAATCAGTCGTGGGTTGTCTAGAGCCTTTTAGAATAGTCAAAGACAACATTCCATGCCCCCATTGCCCTGACCGTACGTTCAGGTATTTTGGAAACTTGCAACGGCATTTGAACACTGATCatagtaacaataataaaatttgcgACTTTTGCGGTCGCACATTCAAAAACGCTACCAACCTCAAAGTTCACATATCGTACTCTCATACTGGTTCTGTTGAATGCGACGTATGTGGCACAAAGTTTAAGAACCAGTGGTGTCTCGCAAGGCACCGTGCTAAGTCCCATGACGCAAAAGATTATAAATGTCCTAAATGTCCCGAGTTATTTCGCTCACATTACGAGAAGCAGAAGCATTTAATAAGAGTTCACGATACAGGGCACAAGTGTGAACATTGTGGAAAGATGTTCACGAGAAATTCGTTCATGAAAGACCATATACGGAGAACTCATTTGAAGGAGAAGAATGTTCCCTGCACTCTGTGTAACGAAAGGTTTTTCGACAATTATCTTTTAAAGATGCATATGGTGAAACATGAAGGTGAGAGGAAATTCTCGTGCAGTGCGTGCGGAAAAGCGTTCTTAAGGAAAACGAATCTCCATTCGCATATGGAAATGCACAAGAAGTATGGTCATGTCGGTCTGTTGCAGGATATAAATCAATAG
- Protein Sequence
- MNNFRCFYCVKDFSDCDDLKEHTATEHPVCDVKLKCLRLKNRQSGIRVKVDISTLSCKVCYQPMQDLEYLIDHLIAEHKASYDKTVDHHLDPFKLIKDNFPCPFCTEIYTYFCTLLKHISESHSENRAICPYCGVTFRTDSNLRFHISHRHNTGSHKCIVCDLSFPTKRHLREHSGSAHGRKVAKCSECSEKFKSPYAVQRHKIDVHGIGHKCTYCGRMFTKKSFMVDHVRRSHLKEKNVECPVCFQRFFNKYMVNKHMVMHVGERNFHCDICGKKFLWKKNLIGHIKKHFFSDENAPAPYEGCASERRRKNLKVLFNNTTIIPFKWRRRFQCFYCPEYYTEYDELKKHTKSHGPCSTKDYALKSIKGSHVEIKIDVSDLTCEICNEPFGDSQEIIDHLIMKHKLDFDKSVDIPLQAYRLADMKCLLCGESFTFFGYLISHVNVHHPQNCYICDDCGLTFNKKRDLGVHYRSYHRKGGYPCEKCPPLVFDNICSLRRHQDNVHYRKCSSCNQKFTTLGLLKRHILSEHPDSSSLTCKHCAKVCQSVQGLQLHKSKCRVTMLSNNESVDATFSGNTEPQKKQNTQQIRENIRCVLNMSTAVPFKFFSKFSCFYCSKKFVEFDDLKTHTESEHPVCDMKCKPMKKCRGERTCVKISIASLLCKLCGLPTDNLELLIDHLIAEHKANYDKSVVGCLEPFRIVKDNIPCPHCPDRTFRYFGNLQRHLNTDHSNNNKICDFCGRTFKNATNLKVHISYSHTGSVECDVCGTKFKNQWCLARHRAKSHDAKDYKCPKCPELFRSHYEKQKHLIRVHDTGHKCEHCGKMFTRNSFMKDHIRRTHLKEKNVPCTLCNERFFDNYLLKMHMVKHEGERKFSCSACGKAFLRKTNLHSHMEMHKKYGHVGLLQDINQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -