Basic Information

Insect: Pycnomerus fuliginosus
Gene Symbol: -
Assembly: GCA_963924575.1
Location: OZ004623.1:2879697-2881694[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.4 2e+02 3.6 1.5 1 23 46 69 46 69 0.96

2 16 0.44 25 6.4 0.1 2 23 131 152 130 152 0.94

3 16 0.0051 0.3 12.5 3.5 1 23 159 182 159 182 0.96

4 16 0.0032 0.19 13.1 2.1 1 23 191 214 191 214 0.96

5 16 0.0063 0.37 12.2 1.2 1 23 232 255 232 255 0.89

6 16 0.0049 0.29 12.6 4.4 1 23 264 287 264 287 0.97

7 16 0.023 1.4 10.4 2.6 1 23 301 324 301 324 0.97

8 16 0.039 2.3 9.7 4.4 1 23 333 356 333 356 0.96

9 16 4.9 2.9e+02 3.1 0.3 1 23 365 388 365 388 0.93

10 16 0.35 21 6.7 5.8 1 23 397 419 397 419 0.97

11 16 0.47 28 6.3 2.6 1 23 429 452 429 452 0.97

12 16 0.052 3 9.3 1.4 2 23 459 481 458 481 0.96

13 16 0.35 21 6.7 6.7 1 23 490 513 490 513 0.96

14 16 0.67 39 5.9 0.7 1 23 522 545 522 545 0.97

15 16 5.3 3.1e+02 3.0 1.7 1 23 554 577 554 577 0.91

16 16 3.7 2.2e+02 3.5 0.3 2 23 616 638 615 638 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.4	2e+02	3.6	1.5	1	23	46	69	46	69	0.96
2	16	0.44	25	6.4	0.1	2	23	131	152	130	152	0.94
3	16	0.0051	0.3	12.5	3.5	1	23	159	182	159	182	0.96
4	16	0.0032	0.19	13.1	2.1	1	23	191	214	191	214	0.96
5	16	0.0063	0.37	12.2	1.2	1	23	232	255	232	255	0.89
6	16	0.0049	0.29	12.6	4.4	1	23	264	287	264	287	0.97
7	16	0.023	1.4	10.4	2.6	1	23	301	324	301	324	0.97
8	16	0.039	2.3	9.7	4.4	1	23	333	356	333	356	0.96
9	16	4.9	2.9e+02	3.1	0.3	1	23	365	388	365	388	0.93
10	16	0.35	21	6.7	5.8	1	23	397	419	397	419	0.97
11	16	0.47	28	6.3	2.6	1	23	429	452	429	452	0.97
12	16	0.052	3	9.3	1.4	2	23	459	481	458	481	0.96
13	16	0.35	21	6.7	6.7	1	23	490	513	490	513	0.96
14	16	0.67	39	5.9	0.7	1	23	522	545	522	545	0.97
15	16	5.3	3.1e+02	3.0	1.7	1	23	554	577	554	577	0.91
16	16	3.7	2.2e+02	3.5	0.3	2	23	616	638	615	638	0.89

Sequence Information

Coding Sequence: ATGGAATTGCAAAAATGCGTGGGATGCAGTTACGAAACGAAATGGAACTTCGCACTGATCGCCCACTACCAGCAAAGCCACCAGGAAGTCCTCCAAACGAAAGCCTTCCTCTGCTCCCAAAGTGACGTGGAAGCTTACAAATGCGCCCTCTGCGTCTTTCAGACACCTTTCAAGGTCAGCTTTTTCAGACATTTCAGGCTGATCCACGGAGCCACCAAATCCCTCGATCTTAACATCGAAAAGTTCCAGGAATACAAATGCAAAGGGTGCAGCTTTAAGACGCACTCGAATTTGattcatttaaatcatttacgGAGAGAAAACTGGTTCGACTGTGCGCATTGTTCAAAAGTCGAGCCTAATCTCAAACATTTGAATAAGGAGCGTTTGAGCTGTGTCCAATGCGGATTTATCGCAGCAAGTCTCTCAGAATTGCAAGAACATTTCAAAGCTCACTCGGTGGAGATTAAATGGTTTTATTGCGAGCAATGTTCTTATAAAACCAAAAAGAGTTATGACCTTAAGAAGCACCGTCTTAGCCTTCACACCCCTGAAGCTGAGATTCCCTGGTTTTACTGCGATTATTGCCCTTATAGGTCAAAAACGCAGAATTATCTTCGCGAACACGTTTCTCGCCGGCATATTGGAGATTTCGTGAAACCTCCAGAGAAAAAACCAGAATTGGTAAAGTGGTTTTATTGCCCTGCCTGTTCTTACAAGACTAAAAGAAGTTCTGATTTGAAAAAACACAATGTGAGTGTGCACACTCCTGATGAGGAAATCACCTGGTTTCAGTGCCCTCACTGTGCGTACAAATCCAAAACtcagaattatttgaaagaACACATGTATAGGAAGCACAAAGACAACTTCGAGATTGACGATGAAAGCGTCGAGTGGTTCTATTGCCTTCACTGCGCGTATAGAACGGAATTTCCTGGTAACTTAAAAAAGCACTTGCAGAGAAATCACTTGTCTGAGGAGGAGACCAAATGGTTTGATTGTACCCTCTGCCTGTacaagtgcaaagaaaaatctTTGCTAAGTCGACACATGCTGAAAAAGCATACTCCAGCTGATCAAGTCGAGTGGTTTTACTGCGAACGATGCTCCTACAAAGCCATGTTTAAGAATGAACTCGAAGGGCATATCGTCAGGATTCACACAGCTAAAGCTGCCAGGACTTGGTACAAGTGCAGCCACTGCTCGTATAAAACCCTCACGAAGAAATACCTCAGAATTCACCTAAGCAGACACATAGATGGTTCTCAGATGAAGTTGTCTTTCCAGTGCAAACAATGCGCGTACAAGACAAAATTTGGCCACAAGCTAGCCTCGCACATGATCCGGGTGCATTTGACCCAAGGCCTGATCCAATGCAAGGAATGCTCTTTTGAGACAACCGAGCAGTATAAGTACAGGCGACACGTGCAGAAAGAGCACACGCCCGACGATCAAGTAAAGTGGTTTTATTGCGACCAGTGCTTTTACAGAACGCGATACAGGTGTCAGCTGAAATCCCACATGCTGTACAGGCATACAGCTGAAGAAGACATCGAGTGGTTTCAATGCGATCGCTGCGTTTATAGGGCCAAGGGGAAGCAAATGCTTGAATATCATATTCTGAGGAGACACACGGCGCATGAGGACATCAACTGGCACAACTGCGGGTTTTGTGCGTACAAAGCTAAAACGACTAACGCTTTGACGAGGCACGTGGTGAAAAAACACACGGATGTCTTGCCTTGGCTGTGCTGCGAACGCTGCTCGTATAGAACTAAAGCGGAGGATAAGCTGCGTCTGCACGATTTGTTGAAGCACAGCTCGGGGCGTAGCGGGAAGATGAAGTGCAGTTACTGCCCTTTTGAGGCGTCTGCCGGGAGGTATTTGCGCAGACATGTGATGGATAAACACTCAGAACGAGGGAATAGTGACTCGGAGTGCGATAAACACGAGACAGACGATGACGATGTGTGGAATAACAGCGATTCTGACTAG
Protein Sequence: MELQKCVGCSYETKWNFALIAHYQQSHQEVLQTKAFLCSQSDVEAYKCALCVFQTPFKVSFFRHFRLIHGATKSLDLNIEKFQEYKCKGCSFKTHSNLIHLNHLRRENWFDCAHCSKVEPNLKHLNKERLSCVQCGFIAASLSELQEHFKAHSVEIKWFYCEQCSYKTKKSYDLKKHRLSLHTPEAEIPWFYCDYCPYRSKTQNYLREHVSRRHIGDFVKPPEKKPELVKWFYCPACSYKTKRSSDLKKHNVSVHTPDEEITWFQCPHCAYKSKTQNYLKEHMYRKHKDNFEIDDESVEWFYCLHCAYRTEFPGNLKKHLQRNHLSEEETKWFDCTLCLYKCKEKSLLSRHMLKKHTPADQVEWFYCERCSYKAMFKNELEGHIVRIHTAKAARTWYKCSHCSYKTLTKKYLRIHLSRHIDGSQMKLSFQCKQCAYKTKFGHKLASHMIRVHLTQGLIQCKECSFETTEQYKYRRHVQKEHTPDDQVKWFYCDQCFYRTRYRCQLKSHMLYRHTAEEDIEWFQCDRCVYRAKGKQMLEYHILRRHTAHEDINWHNCGFCAYKAKTTNALTRHVVKKHTDVLPWLCCERCSYRTKAEDKLRLHDLLKHSSGRSGKMKCSYCPFEASAGRYLRRHVMDKHSERGNSDSECDKHETDDDDVWNNSDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -