Basic Information

Insect: Pycnomerus fuliginosus
Gene Symbol: -
Assembly: GCA_963924575.1
Location: OZ004623.1:23768026-23769915[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.21 12 7.5 1.2 1 22 18 39 18 39 0.92

2 17 0.033 1.9 10.0 1.1 3 23 107 128 105 128 0.93

3 17 0.035 2 9.9 2.3 1 23 166 189 166 189 0.97

4 17 0.38 22 6.6 6.8 1 23 199 222 199 222 0.98

5 17 0.039 2.3 9.7 0.5 1 23 227 250 227 250 0.95

6 17 0.048 2.8 9.5 4.4 1 23 255 278 255 278 0.96

7 17 0.033 1.9 10.0 1.8 1 23 287 310 287 310 0.92

8 17 0.0094 0.55 11.7 7.9 1 23 316 339 316 339 0.96

9 17 0.0083 0.49 11.8 3.8 1 23 348 371 348 371 0.97

10 17 0.064 3.7 9.1 0.9 1 23 380 403 380 403 0.95

11 17 0.27 16 7.1 0.9 3 23 415 436 414 436 0.93

12 17 0.66 39 5.9 5.7 2 19 446 463 445 468 0.89

13 17 0.0053 0.31 12.5 0.7 1 23 474 497 474 497 0.96

14 17 0.29 17 7.0 4.3 1 23 504 527 504 527 0.91

15 17 0.019 1.1 10.7 1.7 1 23 536 559 536 559 0.93

16 17 0.11 6.3 8.4 2.2 2 23 569 591 569 591 0.96

17 17 0.13 7.4 8.1 0.3 1 23 599 622 599 622 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.21	12	7.5	1.2	1	22	18	39	18	39	0.92
2	17	0.033	1.9	10.0	1.1	3	23	107	128	105	128	0.93
3	17	0.035	2	9.9	2.3	1	23	166	189	166	189	0.97
4	17	0.38	22	6.6	6.8	1	23	199	222	199	222	0.98
5	17	0.039	2.3	9.7	0.5	1	23	227	250	227	250	0.95
6	17	0.048	2.8	9.5	4.4	1	23	255	278	255	278	0.96
7	17	0.033	1.9	10.0	1.8	1	23	287	310	287	310	0.92
8	17	0.0094	0.55	11.7	7.9	1	23	316	339	316	339	0.96
9	17	0.0083	0.49	11.8	3.8	1	23	348	371	348	371	0.97
10	17	0.064	3.7	9.1	0.9	1	23	380	403	380	403	0.95
11	17	0.27	16	7.1	0.9	3	23	415	436	414	436	0.93
12	17	0.66	39	5.9	5.7	2	19	446	463	445	468	0.89
13	17	0.0053	0.31	12.5	0.7	1	23	474	497	474	497	0.96
14	17	0.29	17	7.0	4.3	1	23	504	527	504	527	0.91
15	17	0.019	1.1	10.7	1.7	1	23	536	559	536	559	0.93
16	17	0.11	6.3	8.4	2.2	2	23	569	591	569	591	0.96
17	17	0.13	7.4	8.1	0.3	1	23	599	622	599	622	0.95

Sequence Information

Coding Sequence: ATGAGCCAGCGTGAACAAACAACCCCAATTTGTATAAACCTCCCCGAACCTTACACTTGTGCATTTTGCGGCTACAAAACATTCTTCAAAGCATCCCTCCTAGAACACAAGCGTAAATCATCCCCGGCAACCCCCTTCGAGGAATACATTTGCAGCTCTTGCAACCTCTCAAGCTATTCCGAGCTAATCTTTGACAACCACGAATGCAAACCTGGCGAAAACTTAGGATCAATCAGCTTTAAAGTTGACTTCCACGACGACGTGATCGAAGAAGTTCAATGTACTGAAGTAAAACTCGAGGAAAACCTgggaattatctgcaaattctgCTCGAGAAAATACAAGAACAAATTGCGTTTACAACAACACATTTCGGAGATTCACGTTACTGGCAAACGATACGATTGCGACCAATGCGACTACAGGAGTTATCGCAAATTCGTCATGAAGTGTCATAAGCTGAACCGACACACGAATGCGGAGGATATCAAATGGTTCCAGTGTAATAAATGTGCTTTTCGATCAAAAACAGAGACGCAATATAAAGCTCACATTTTGAAGCGACACACTGATGCGAAGGATGTCACAAAGTGGTATAGATGCAGCCACTGCAATTTTAAAGCAATAACGAAGTGTCGACTCACAAGACACTATTTAACCCTTCACAGCAGCAATTTTTTTCAGTGTGACTCCTGCAGTTACACGACTAAAATTGAGTCTGATTTAAAAACGCACGTCGCAATTAAACACTCCAATATTTGGCATCAGTGCCAAAAGTGTGAGTTTCGCACCAAGAGAAAGTACTACATGAAAGAGCACATAATAGTGAAGCACACAAAACCTGAAGAGATAAATTGGTTCAGCTGCAGCTTTTGCGACTATAAAACCAAAACGAAGATTTTATTAACCGAGCATAAACTAGCGAAACACACGGTAAGATCATGCTTTAGCTGTCACGTTTGTGGGTTTCACTCAAAAACCAAGAGGAGCCTGAAGAAGCACATACATTCACTTCACTCGAAACCCGAATCGATCAATTGGCACAAGTGCGACAACTGCGACTTTAAAACAAAGTACAAGTCTGGGTTAAGAGCGCATTTTTTAACGCAACATACAGATCCAAGGGTTATCCAGTGGTTCAACTGCGATCTCTGCGATTTTAAAGCTAAGAAACAAGGTTATTTGGCCAGACATAAAAGTGTTAGACACGCAAATCCGTCAGTAAAAATCGAATGGGTACTTTGCGTACAGTGCGATTTTAAAGCTAAATCCAAGTACGCTTTAAAAAGTCACATTTTTTATAAACACACAGATGATGGAGTTAGACAGTGGATCGTTTGCGACGAGTGTGATTTCAAAACCAAGACAAAGGCGCATCTGAAACTTCATTGCCAGCATAGACACGCTGGCGAGCTtaaatttccctgcgatattTGTAGTTTTAAAGCCAAGACGAAGGAGAATCTTAGAATGCACAAATTAAGGGTGCATGTTGATCCCTCGAAATGGTTTCACTGCGATCATTGCGACTACAAGACTGCGATCCAAAGTTCGCTGAAATTACACGTTTTTTACAAACACACAAGTCCGGATGAGATCGCTTGGTTTGATTGTAAGAAATGCAAGTATCGAGGGAAAACAAAGGCTCTTTTGGTGAGGCACACGTTGTTGAAGCATACGGATCCTGAAGAGATCAATTGGCGCGAATGCCATTTGTGTGGGTTGAAGCAAAAGACGATGTCTCAACTGACTCAGCACGTGAAGAAAGTGCACGAGGGGTTGGATAAGGGGTGGTTTAAGTGTGGCAAATGTGACTTTAAAGCACGTGTGAAGGCGCAGTTGGGGGTTCATAAGAGAGATGCGCATAAAGGCTGCGGTAGTCGCAAatga
Protein Sequence: MSQREQTTPICINLPEPYTCAFCGYKTFFKASLLEHKRKSSPATPFEEYICSSCNLSSYSELIFDNHECKPGENLGSISFKVDFHDDVIEEVQCTEVKLEENLGIICKFCSRKYKNKLRLQQHISEIHVTGKRYDCDQCDYRSYRKFVMKCHKLNRHTNAEDIKWFQCNKCAFRSKTETQYKAHILKRHTDAKDVTKWYRCSHCNFKAITKCRLTRHYLTLHSSNFFQCDSCSYTTKIESDLKTHVAIKHSNIWHQCQKCEFRTKRKYYMKEHIIVKHTKPEEINWFSCSFCDYKTKTKILLTEHKLAKHTVRSCFSCHVCGFHSKTKRSLKKHIHSLHSKPESINWHKCDNCDFKTKYKSGLRAHFLTQHTDPRVIQWFNCDLCDFKAKKQGYLARHKSVRHANPSVKIEWVLCVQCDFKAKSKYALKSHIFYKHTDDGVRQWIVCDECDFKTKTKAHLKLHCQHRHAGELKFPCDICSFKAKTKENLRMHKLRVHVDPSKWFHCDHCDYKTAIQSSLKLHVFYKHTSPDEIAWFDCKKCKYRGKTKALLVRHTLLKHTDPEEINWRECHLCGLKQKTMSQLTQHVKKVHEGLDKGWFKCGKCDFKARVKAQLGVHKRDAHKGCGSRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -