Basic Information

Insect: Pycnomerus fuliginosus
Gene Symbol: -
Assembly: GCA_963924575.1
Location: OZ004617.1:20789406-20790583[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0083 0.49 11.8 1.3 2 23 61 82 60 82 0.96

2 9 0.21 12 7.4 9.9 1 23 89 112 89 112 0.97

3 9 0.0061 0.36 12.3 2.2 1 20 121 140 121 144 0.95

4 9 0.0004 0.023 16.0 5.0 1 23 185 207 185 207 0.97

5 9 0.004 0.23 12.8 3.2 2 23 217 239 216 239 0.92

6 9 0.1 6 8.4 7.8 1 23 248 271 248 271 0.94

7 9 0.018 1 10.8 1.9 1 23 280 302 280 302 0.95

8 9 6.3e-06 0.00037 21.7 0.4 1 23 311 333 311 333 0.97

9 9 0.0021 0.12 13.7 0.9 1 21 340 360 340 361 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0083	0.49	11.8	1.3	2	23	61	82	60	82	0.96
2	9	0.21	12	7.4	9.9	1	23	89	112	89	112	0.97
3	9	0.0061	0.36	12.3	2.2	1	20	121	140	121	144	0.95
4	9	0.0004	0.023	16.0	5.0	1	23	185	207	185	207	0.97
5	9	0.004	0.23	12.8	3.2	2	23	217	239	216	239	0.92
6	9	0.1	6	8.4	7.8	1	23	248	271	248	271	0.94
7	9	0.018	1	10.8	1.9	1	23	280	302	280	302	0.95
8	9	6.3e-06	0.00037	21.7	0.4	1	23	311	333	311	333	0.97
9	9	0.0021	0.12	13.7	0.9	1	21	340	360	340	361	0.95

Sequence Information

Coding Sequence: ATGTCCGGCTACTTAGTCAATTTTTATGACGAAGTCGAGGAAGCGGTGGACGTTAAACAGGAAGTGAAAGAAGAATTGCCTGATGCAGACTCGGAAAATAATTATTCAAACGcaaaagaagaaaatgttaataTAAATTTTGAAGCTGAAACTGATCAAAAAGATAAAACCGAATGGCTTTATTGTGCTAAATGCGATTACAAATCGAAAGAAAAGCGCCTCTTGAAACGGCACGTGATCAAGCATCTAAAGCCGGTCAGATGGTTTCATTGTGACAAATGTGAGTACAAATGTAAACAAAAATGTTATCTTAAAGCGCACACCATTACAAAACATCTAAAACCAGATGAGATTCAATGGTTTCGTTGCCAGGAATGCGAACTGAAATTTAAACGCAAGGTCGGTCTCGACAATCACATAATTTGCAAGCATCTCGATGAAAACGAGGTTCACTGGTTTCACTGCGACCAATGCGACTTCAAATCTAAGTTGAAGTGTGTCCTGAGGCAGCATACCTTCAGCAGACATACAAATCCAAGCGAGATCGAGTGGTTTCGTTGCCATAAGTGTGACTACAAGAGTATACGAAAATCTCACCTTGAAATCCACCTTGTTAGACATCTAAGTTCAGATGAGATCAAGTGGATTTATTGTGATGAATGTGACTACAAGTGTAAAGAAAAAAGTACCCTAAACAAGCACAAAATCTATAGGCATCTAACTTCAGATGAAATCAAATGGTTTCATTGCGATAAATGTGACCACAAATGTAAAGATCGCGCCACCCTTAAAAGCCACGTTCTTTACAAGCACCTAACTTCTGATCAGGTAAAATGGTTTTATTGCGACAAATGCGATTACAAATCCAAAAAAAGGTGGACTCTTAACAGTCACGCAGTTAAGCATCTCAACAAGGACGAGATTCGATGGTTTCGCTGCGAAGAATGCGACCGTAAGTACAAGCGGAAGGGTGACCTGCTAGCGCACGTGAGCATTCACAATCCTGGTAAAATCGAGTTTAAATGCGACAAATGCGACGCAACATATAAGCTAAAGAGCAGACTGAGAGCTCACGAGCGATTTCAACAAACACAGCGTTAA
Protein Sequence: MSGYLVNFYDEVEEAVDVKQEVKEELPDADSENNYSNAKEENVNINFEAETDQKDKTEWLYCAKCDYKSKEKRLLKRHVIKHLKPVRWFHCDKCEYKCKQKCYLKAHTITKHLKPDEIQWFRCQECELKFKRKVGLDNHIICKHLDENEVHWFHCDQCDFKSKLKCVLRQHTFSRHTNPSEIEWFRCHKCDYKSIRKSHLEIHLVRHLSSDEIKWIYCDECDYKCKEKSTLNKHKIYRHLTSDEIKWFHCDKCDHKCKDRATLKSHVLYKHLTSDQVKWFYCDKCDYKSKKRWTLNSHAVKHLNKDEIRWFRCEECDRKYKRKGDLLAHVSIHNPGKIEFKCDKCDATYKLKSRLRAHERFQQTQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -