Pful025776.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004623.1:20862174-20864021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.1 4.2e+02 2.6 0.2 1 15 44 64 44 67 0.71 2 17 1.6 94 4.7 6.1 2 23 86 108 85 108 0.94 3 17 0.052 3 9.3 4.6 1 23 119 142 119 142 0.96 4 17 0.0081 0.48 11.9 3.0 1 23 151 174 151 174 0.96 5 17 0.0014 0.08 14.3 1.4 1 23 187 210 187 210 0.94 6 17 0.0012 0.067 14.5 2.5 1 23 219 242 219 242 0.95 7 17 0.015 0.87 11.1 1.1 1 23 250 273 250 273 0.97 8 17 0.00023 0.013 16.8 4.0 1 23 278 301 278 301 0.97 9 17 0.0068 0.4 12.1 3.2 1 23 310 333 310 333 0.95 10 17 0.18 11 7.6 4.7 1 23 342 364 342 364 0.98 11 17 0.02 1.2 10.6 1.8 1 23 371 393 371 393 0.97 12 17 0.12 7 8.2 1.3 1 23 401 424 401 424 0.96 13 17 0.074 4.3 8.9 0.3 1 23 431 454 431 454 0.97 14 17 0.019 1.1 10.7 1.5 2 23 461 483 460 483 0.93 15 17 0.034 2 9.9 5.7 1 23 492 515 492 515 0.95 16 17 0.42 25 6.5 1.6 1 23 524 547 524 547 0.97 17 17 0.39 23 6.6 1.1 2 23 586 608 585 608 0.96
Sequence Information
- Coding Sequence
- ATGGAGGTGTACAGGTGCGTTGGATGTAGTTTTGAGACTAATTGGACCTTTGCTTTAGAAGCTCATTATAAACAGAGGCATTTCCTTCCCAGAAACATCCCCTTCGATTGTCGGGCAAATCTAGAAGCGTATAGCTGCCCTCTCTGTGACTTCAAAGCCTTGTCAATCACCAGCTTCAAATCACACTCTCACATGGCCCAGGAATTTGAATTCAAACCCCACTTTCTGAGTGAACTCAGCGACGAGCAGTTATTATGCTGCCCCCATTGTCTTTACAAGGCGAAACGCCTCGTCGACCTCAAGAGACACGTCCACAAAAAACACCCCCTGGACCCCAGCTATCGCGTGAAATATTTCAACTGTGACCATTGTGATTACAAATCAAAAAAAAGCCACGACGTCAAGAAACACGTTCTTAGCGTTCACACTAGGGATGAAGATATTCCGTGGTTTTACTGTGAACATTGTGATTACAAATCAAAGACTGAGGGGTACCTTAAAGAGCATGTTTCTCGAAGACACGAGGGTACATTCTGTAAACCAGTAACTGTCAAATGGTATTTTTGTACGGAATGTTCATATCGGACTAAAAGAAGCACCGATTTAAAGAAACACGCAATTAGTGTTCACACCCCCGATGAAGAAATCGAATGGTTCAATTGCATGATCTGCGACTATAGATCAAAAACTAGTTCATATCTACGAGAGCACATGTTCCGGAAACATAAAACCACTACAAACAATCAATTTACTTGTGACCGATGTGAATATTCGACTGAGTTTATTGGTAACTTAAAAAAACACGTTCAAAGACAGCATGAAATCCAATGGTTTCAGTGTGACTATTGTGATTACAAAACCAAGGAAAATTCGCATTTAAATCGGCACGTGTTGAAGAAACACGTGGATCCGAATGAATTCGAAGGGTTTTCTTGCCATCACTGTGGTTACAAAGCCGCCTTTAAGAAGGACCTCGAAAATCATATTGTCAAGCAACACACTGACAAAAAAGATCGATTATGGTACGAGTGCAACAATTGTTCTTACAAATGTTTAACGAAAAAATCGCTTCGTGTTCATTTAAGCAAACATTTGGAATTCACTTCGAATTTCAGCTGTGACCAATGCACTTACAACACTCTTACGAGGGGTGATCTGCGACGTCATATGAAGCAACACAACGTGGATCAAGTCACCTGGTTTACCTGTGACAGCTGTAGCTTCCAAGCAAAAACAAGGATGGCCCTGAGAAGGCATTTGTTAAGCAAACACTCGACGGAAATGAACTGGtttgaatgtaaaaaatgtGAGTACAAAGCCAAAGACAGGGGTGTCCTTGCGGGGCACATGCTTCGTAAACATTCgacaaaagaggaagtgaaaTGCGCTCAGTGCGATTTTAAGACGACTCAGTCGAGTCGATTGAAAAGACACGTGGAGCAAAAGCACACCCCCGATGACCAGATTCAGTGGTTCTACTGTGACCAATGTTTCTATAGAACTCGGTACCAGACTCATTTGAAGTCCCATATGATATACAGGCATACAGCTGAAGAGGACATCGATTGGTTTGTCTGTGACCGTTGTGCGTATAAGTCAAAGGGTAAACACGCTTTGGATAGTCATATGCTGAGGAGGCACACGGCTCCTGAGGATATAAGTTGGCATCACTGCATACACTGCCAGTATAAGGGCAAGATCAAGGCGGCGTTAGCAAGGCATGTGgttaaaattcacaaaaacttGAAGTGGAATCAGTGCAGAAAGTGTCAGTACAGGTCGAGGGTGGAAGAGAAATTACGAGTTCATGTATTGATGAAGCATTATGATGATGATGAAGATGATTAG
- Protein Sequence
- MEVYRCVGCSFETNWTFALEAHYKQRHFLPRNIPFDCRANLEAYSCPLCDFKALSITSFKSHSHMAQEFEFKPHFLSELSDEQLLCCPHCLYKAKRLVDLKRHVHKKHPLDPSYRVKYFNCDHCDYKSKKSHDVKKHVLSVHTRDEDIPWFYCEHCDYKSKTEGYLKEHVSRRHEGTFCKPVTVKWYFCTECSYRTKRSTDLKKHAISVHTPDEEIEWFNCMICDYRSKTSSYLREHMFRKHKTTTNNQFTCDRCEYSTEFIGNLKKHVQRQHEIQWFQCDYCDYKTKENSHLNRHVLKKHVDPNEFEGFSCHHCGYKAAFKKDLENHIVKQHTDKKDRLWYECNNCSYKCLTKKSLRVHLSKHLEFTSNFSCDQCTYNTLTRGDLRRHMKQHNVDQVTWFTCDSCSFQAKTRMALRRHLLSKHSTEMNWFECKKCEYKAKDRGVLAGHMLRKHSTKEEVKCAQCDFKTTQSSRLKRHVEQKHTPDDQIQWFYCDQCFYRTRYQTHLKSHMIYRHTAEEDIDWFVCDRCAYKSKGKHALDSHMLRRHTAPEDISWHHCIHCQYKGKIKAALARHVVKIHKNLKWNQCRKCQYRSRVEEKLRVHVLMKHYDDDEDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -