Pful015434.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pycnomerus fuliginosus
Gene Symbol
-
Assembly
GCA_963924575.1
Location
OZ004619.1:48801073-48808238[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.27 16 7.1 5.0 1 23 131 154 131 154 0.94
2 16 0.0074 0.43 12.0 1.5 2 23 163 185 162 185 0.93
3 16 0.0025 0.15 13.5 2.2 1 23 194 217 194 217 0.96
4 16 0.043 2.5 9.6 4.0 1 23 226 249 226 249 0.95
5 16 0.15 8.7 7.9 1.5 1 20 258 277 258 278 0.95
6 16 2.8 1.6e+02 3.9 0.9 1 12 290 301 290 306 0.84
7 16 2.2 1.3e+02 4.2 0.9 2 23 414 436 413 436 0.92
8 16 0.0029 0.17 13.3 1.8 1 23 445 468 445 468 0.96
9 16 0.0099 0.58 11.6 3.3 1 23 477 500 477 500 0.96
10 16 2.8 1.6e+02 3.9 0.9 1 12 509 520 509 525 0.84
11 16 0.00042 0.024 15.9 3.1 1 23 601 624 601 624 0.96
12 16 0.0021 0.12 13.7 3.4 1 23 633 656 633 656 0.95
13 16 0.026 1.5 10.3 5.3 2 23 666 688 665 688 0.92
14 16 0.61 36 6.0 5.4 2 23 696 718 695 718 0.92
15 16 0.0064 0.37 12.2 2.7 1 23 727 750 727 750 0.94
16 16 0.00013 0.0076 17.5 2.5 1 23 759 782 759 782 0.96

Sequence Information

Coding Sequence
ATGCTTGATCATGAGGGACTAAAGACAAGATCTAAACATATTGAAGTGAAATACCATTTTGTGAAAGAAATCAAAAAGAAGAAAAACGTTCACTTCAAGTACTGTTCAACAAATGAAATGTTGGCTGATATATTAActaaggTCGACTTTTacgatgaagttgaagaggaaGAGGAGATTGTTAAACTGGAACCAAAGGAGGAGTGGAACGTGGACAACGCGAGTTTCGGTGAAGAAGTAAAGATAGAAATTGAGGAAGAAATCGACATCAAGTGGCATGAGTTAAATGTATCAGTCCCACTTCTGAGCGTGGATCAAGCGGAAAAATTGAAGGACGGGGAATGTGCCGCTAAATCGTTATTACAGCAGGAGGCAAATGAACCCAAATGGTTTGAATGTGAGCAGTGTGACTACAAAACTTTACATAAACGAAACCTGAAGAAACATACGACTAGCAAACACTCGAGCGATGATGCAGAATTGCTTGAATGCGATAGGTGCGATTTCAAAACCAAGCGGAAGATTAACCTGAGAAAGCACGTCATTAATAAGCATTTAAGTGAAGACGAGATTgagtggttcaagtgcgagaaatgtgaCTATAAAGCTAAAACGAAGGATCTCCAGCGTCGGCACATGAAGGCTCAACATCTACGTGAAGATGAGATtaggtggtttaagtgcgaaaaatgcgagcACAAGGCTAAAGTAAAGACCAACCTGCACAAGCACATGATTGGTCAGCATCTACGTGAAGatgagattagatggtttaggtgcgaaaaatgcgagtaCAAGGCTAAGCGAAAGGAATGCCTGCGACTGCACGTCATTTGTAAACATCTAAACAGAAGTGAAATAAAGTGGTTCATCTGCGAGAAATGTGATTACAAATTCGACTTTTacgatgaagttgaagaggaaGAGGAGATTGTTAAACTGGAACCAAAGGAGGAGTGGAACGTGGACAACGCGAATTTCGGTGAAGAAGTAAAGATAGAAATTGAGGAAGAAATCGAAATCAAGTGGCATGACTTAAATGTATCAATCCCACTTCTGAGCGTGGATCAAGCGGAAAAATTGAAGGACGGGGAATGTGCCGCTAAATCGTTATTACAGCATAAGGCAAATGAACCCAAATGGTTTGAATGTGAGCAGAGTGACTACAAAACTTTACATAAGCGAAACCTGAAGAGACATACGACTAGCAAACACTCGAGCGATGATGCAGAATTGCTTGAATGCGATAGGTGCGATTTCAAAACCAAGTGGAAGGTTAGCCTGAGAAAGCACGTCATTAATAAACATTTAAGTGAAGACGAGATTgagtggttcaagtgcgagaaatgcgactataaagctaAAACGAAGGATGGCCAGCGTCGGCACATGAAGGCTCAACATCTACGTGAAGatgagattagatggtttaggtgcgaaaaatgcgagtaCAAGGCTAAGCGAAAGGAACACCTGCGACTGCACGTCATTCGTAAACATCTAAACAGAAATGAAATAAAGTGGTTCATCTGCGAGAAATGTGATTACAAATTCGACTTTTacgatgaagttgaagaggaaGAGGAGATTGTTAAACTGGAACCAAAGGAGGAGTGGAACGTGGACAACGCGAGTTTCGGTGAAGAAGTAAAGATAGAAATTGAGGAAGAAATCGACATCAAGTGGCATGAGTTAGATGTATCAATCCCACTTCTGAGCGTGGATCAAGCGGAAAAATTGAAGGACGGCGAATGCACCGCTAAATCCTTATTACAGCAGGAGGTAAATAAAGAAAGATGGTTTGAATGTGAGAAGTGCGACTACAGATGCAAGAGAAAGGCCGATCTAAATGCCCATAAAATTCGTAAGCATCTAAGTGAAAAACAGATCAAATGCTTTAAATGCGAAAAATGCCATTACAAAACTATAAACAAAGTGGACCTGAAAAGGCATGTGACGGTCAAGCATACTGATCTAAGCAAAATCAAATCGCTTAAATGCGACAGATGTGACTACAGCACTAAACATAAAGTGAACCTGAAGAATCATGTTACTCATAAGCATACCGAAGAAAGCAAAATGCTGAAATGTGAGAAATGCGACCACAAAACTATGTTTAAAAGTCATATGAATCGACACGTGattaataaacatcaaaatgaAAACGAAATCAGTTGGTTCaaatgcgagaaatgcgactatgaAGCTAAACTAAAGTATAACCTGCACAGACACATGGTTAATCAGCATATAAGTGATGATGAGATtggatggtttaagtgcgaaaaatgcgagtaCAAGACTAAGCGGAGGCAAAACCTCCAACGACACCTGAAAGCGGTTCATCTGCGAGAAGGAGGACCAGAAATGTTAAGTGATAAATAA
Protein Sequence
MLDHEGLKTRSKHIEVKYHFVKEIKKKKNVHFKYCSTNEMLADILTKVDFYDEVEEEEEIVKLEPKEEWNVDNASFGEEVKIEIEEEIDIKWHELNVSVPLLSVDQAEKLKDGECAAKSLLQQEANEPKWFECEQCDYKTLHKRNLKKHTTSKHSSDDAELLECDRCDFKTKRKINLRKHVINKHLSEDEIEWFKCEKCDYKAKTKDLQRRHMKAQHLREDEIRWFKCEKCEHKAKVKTNLHKHMIGQHLREDEIRWFRCEKCEYKAKRKECLRLHVICKHLNRSEIKWFICEKCDYKFDFYDEVEEEEEIVKLEPKEEWNVDNANFGEEVKIEIEEEIEIKWHDLNVSIPLLSVDQAEKLKDGECAAKSLLQHKANEPKWFECEQSDYKTLHKRNLKRHTTSKHSSDDAELLECDRCDFKTKWKVSLRKHVINKHLSEDEIEWFKCEKCDYKAKTKDGQRRHMKAQHLREDEIRWFRCEKCEYKAKRKEHLRLHVIRKHLNRNEIKWFICEKCDYKFDFYDEVEEEEEIVKLEPKEEWNVDNASFGEEVKIEIEEEIDIKWHELDVSIPLLSVDQAEKLKDGECTAKSLLQQEVNKERWFECEKCDYRCKRKADLNAHKIRKHLSEKQIKCFKCEKCHYKTINKVDLKRHVTVKHTDLSKIKSLKCDRCDYSTKHKVNLKNHVTHKHTEESKMLKCEKCDHKTMFKSHMNRHVINKHQNENEISWFKCEKCDYEAKLKYNLHRHMVNQHISDDEIGWFKCEKCEYKTKRRQNLQRHLKAVHLREGGPEMLSDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-