Pful024137.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004623.1:1910394-1912346[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.3 1.3e+02 4.2 6.9 1 23 132 155 132 155 0.94 2 17 0.056 3.3 9.2 5.2 1 23 164 187 164 187 0.95 3 17 0.024 1.4 10.4 3.2 2 23 196 218 195 218 0.95 4 17 0.064 3.8 9.1 3.8 1 21 223 243 223 246 0.90 5 17 0.003 0.18 13.2 2.3 1 23 254 277 254 277 0.92 6 17 0.37 22 6.7 1.4 2 23 288 310 287 310 0.93 7 17 0.15 8.9 7.9 5.9 1 23 316 339 316 339 0.96 8 17 0.028 1.6 10.2 1.4 2 23 351 373 350 373 0.94 9 17 0.042 2.4 9.6 2.3 1 23 379 402 379 402 0.94 10 17 1.5 89 4.7 2.6 1 23 409 431 409 431 0.95 11 17 0.011 0.65 11.5 2.8 2 23 441 463 440 463 0.91 12 17 8.1e-05 0.0047 18.2 1.2 3 23 474 495 472 495 0.94 13 17 0.068 4 9.0 0.3 2 23 505 527 504 527 0.93 14 17 0.00037 0.022 16.1 0.7 2 23 537 558 536 558 0.97 15 17 0.012 0.72 11.3 1.2 1 23 564 587 564 587 0.94 16 17 0.013 0.74 11.3 1.9 1 20 596 615 596 618 0.93 17 17 0.04 2.3 9.7 4.3 1 20 624 643 624 647 0.88
Sequence Information
- Coding Sequence
- ATGCTGAGGGTAGTGCGAGGCCCCCAACTGAGGGCTAGAACAACCCCTTTTGACTGCTCAAAGGACCCCCCAGAGCCCCACAACTGCCCGAACTGCgacttaaaaaataatttaaaaattttcatattcgaACACAACACTGAAGAGAAAAATCTGAAGCAACACCAATGCGACAACTGCAACTTCTTGACATTCTCCACAATTATGTACGAACTTCACCAATGCAACTACAAGAAAAcgtcaaaaaaaattacattcaaCGTCGATTTTTACGACGAAGTCGAAGAAGAAAGAGAGCCCGTTCTGTACGTCGATATgacaaaaaacaataatttattaaaagATCCAAAATCGCGCGAATGTGGACATCGTGAGAGAAATGCCCCCACGTGGTTTCAGTGTACAAACTGCGACCATAAATCCCAGTATAAGAGTAATATAaggcatcattttaaagctagACACGCCAGTCGCGACGCACTCAACTGGTTCAAATGTGACCATTGTGAGTTTGAAACCATCCACAAAACGTCGTTGAAACAGCATTTATCGAATCAACACAATCGCGATAAAGCCAAAGTGATGAAATGTAAAAAGTGCGATTTTAAAACAATCAACAGATCGTCTTACACCGATCACATCCAACACGTTCACGACGAAAATTGGTACGAATGCAACGAATGCGGGTTTAAAACACACCGAAAGACGTATCTTGCCAAGCATTTCGCGTTCAAACACAGGAAAAGCGAGTGTAAGCTTTTCGAATGTGACAAATGCGATTTTACAACCCCTACGAAATCGTACCTTAAGACTCACTCGTTGTATAAACATACTACGAACTTTGAGGGGGTGAAATGGTTGGAATGTAACAAATGCGAGTATAAAACAATCTTTAGAAATAAGCTTAGCCGTCATAATCGCGATGTTCACAGAGAAGCCGAGCtattcaagtgcgagaaatgcgatttCACgacgaaacacaaaaaatcaATTGAGCAACACTTCATGAGAAAACACACAATTCGAGATAAAAGCAAAGCCGAGTGGTTAAAGTGCaaaaaatgcgattttaagACTATAAACGCGAGCACTTTGCAAGGGCACAATCGTCTCAAGCACAGAGAAAGGAAATGGCACGAATGCGCTCAGTGCTCCTTTAAAACCAAATCAAAGCAAAGCCTGAAAAACCATTTAAACGCGATTCACGCCGAATTTGCGAAACGTTTCAAATGCAAATCGTGCGATTACGAAGCCAAATACCAAAGCAGCTTGTACTTTCACGCCAAACGCCACGCTAAGTCCGAGGATATAAAATGGCTAAAATGCGAACAATGCGACGCTAAATTCAAATCAAGCGGCTGCTTAAAGAGCCACTTTATATACAACCACGCGAAAGACGACGAAATCAAGTGGCTTGCGTGCGAATCGTGCGGCTTCAAGTTCAAGGACAGGTCTAGCCTCAAGCGTCACGTGCTGAGAAAACACACCGATCCAGACAAAAAAGTGTACTTAGAATGTGACGTGTGCGATTTTAAAACCCCGCTGAGGTATAATCTGAAAGAGCACACTAGCAATGTTCACGGCGATAAAGAAAGTAAGAAGAAGTGGACGTGCGAAGTTTGCAAGAGGGTGCTTTCGAGTAAGGGGTGCCTTAGGATTCACATGCTCATCCACTATTCCGAGGCTAgatttttctgcgatttttgcGACTATAAGAGCCGTTTGAAGGGGAATTTGACGCAGCATTTGCTCAATGTGCACACGGAGGAGGGAAAAATCGAGTGGTTTTATTGTCACGATTGTAGTTATAAGGCGAAGAGTAAGAGTGCCTTGAGATGGCACGTGCCGAAGCATTTGGATGAGAGGAACTTCCCGTGTGATAAATGCGATTATAGGGCTAAGACTAAGCATGAACTGAACCGACATTGCTTAAGGGTGCATAAAAGAAGTTAA
- Protein Sequence
- MLRVVRGPQLRARTTPFDCSKDPPEPHNCPNCDLKNNLKIFIFEHNTEEKNLKQHQCDNCNFLTFSTIMYELHQCNYKKTSKKITFNVDFYDEVEEEREPVLYVDMTKNNNLLKDPKSRECGHRERNAPTWFQCTNCDHKSQYKSNIRHHFKARHASRDALNWFKCDHCEFETIHKTSLKQHLSNQHNRDKAKVMKCKKCDFKTINRSSYTDHIQHVHDENWYECNECGFKTHRKTYLAKHFAFKHRKSECKLFECDKCDFTTPTKSYLKTHSLYKHTTNFEGVKWLECNKCEYKTIFRNKLSRHNRDVHREAELFKCEKCDFTTKHKKSIEQHFMRKHTIRDKSKAEWLKCKKCDFKTINASTLQGHNRLKHRERKWHECAQCSFKTKSKQSLKNHLNAIHAEFAKRFKCKSCDYEAKYQSSLYFHAKRHAKSEDIKWLKCEQCDAKFKSSGCLKSHFIYNHAKDDEIKWLACESCGFKFKDRSSLKRHVLRKHTDPDKKVYLECDVCDFKTPLRYNLKEHTSNVHGDKESKKKWTCEVCKRVLSSKGCLRIHMLIHYSEARFFCDFCDYKSRLKGNLTQHLLNVHTEEGKIEWFYCHDCSYKAKSKSALRWHVPKHLDERNFPCDKCDYRAKTKHELNRHCLRVHKRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -